Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120241.Seq
(725 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 46 2e-05
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 46 2e-05
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 46 2e-05
AF067216-12|AAL02459.1| 403|Caenorhabditis elegans Hypothetical... 34 0.090
AF067216-11|AAL02458.1| 707|Caenorhabditis elegans Hypothetical... 34 0.090
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso... 30 1.9
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 30 1.9
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 30 1.9
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 30 1.9
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 30 1.9
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 30 1.9
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 30 1.9
Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z83125-12|CAB05627.1| 302|Caenorhabditis elegans Hypothetical p... 29 3.4
Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical p... 29 3.4
Z81147-13|CAB03540.1| 302|Caenorhabditis elegans Hypothetical p... 29 3.4
Z81077-4|CAB03071.3| 618|Caenorhabditis elegans Hypothetical pr... 29 3.4
AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical ... 29 3.4
AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical ... 29 3.4
AF067936-3|AAC19216.2| 922|Caenorhabditis elegans Hypothetical ... 29 3.4
U97592-5|AAB52873.1| 597|Caenorhabditis elegans Hypothetical pr... 29 4.5
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 29 4.5
Z99710-6|CAB16869.1| 362|Caenorhabditis elegans Hypothetical pr... 28 5.9
U40955-4|AAA81752.1| 297|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z50742-5|CAA90618.2| 650|Caenorhabditis elegans Hypothetical pr... 28 7.8
AC006645-6|AAF39847.1| 462|Caenorhabditis elegans Hypothetical ... 28 7.8
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +1
Query: 259 TKYSAAYPLRSVSAEETTDCLIH--FISLFGIPNTIFTDQGTNFTSDLFKSTCSFLKIKN 432
TKY A P+ AE + I IP + TDQG F + LF LKI++
Sbjct: 1649 TKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQFTHMLKIEH 1708
Query: 433 LWSTPYHPQSQGALERSHSTL 495
+ + Y+ ++ GA+ER + T+
Sbjct: 1709 ITTKGYNSRANGAVERFNKTI 1729
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 5 GGNRMLSRIKEKYYWKGIKSDVENYIKNCTLC 100
G +M + K+YW ++ VEN ++ C C
Sbjct: 1568 GIKKMWRMVHRKFYWPQMRVCVENCVRTCAKC 1599
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +3
Query: 534 DWPRYVYTAMLSYNTAIHSTTNFSPYELLFGHKAFIPDSIYKQD 665
+W V A+ +YN +H T +P L+ G P + +D
Sbjct: 1742 EWDDQVVYAVYAYNNCVHENTGETPMFLMHGRDVMGPLEMSGED 1785
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +1
Query: 259 TKYSAAYPLRSVSAEETTDCLIH--FISLFGIPNTIFTDQGTNFTSDLFKSTCSFLKIKN 432
TKY A P+ AE + I IP + TDQG F + LF LKI++
Sbjct: 1552 TKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQFTHMLKIEH 1611
Query: 433 LWSTPYHPQSQGALERSHSTL 495
+ + Y+ ++ GA+ER + T+
Sbjct: 1612 ITTKGYNSRANGAVERFNKTI 1632
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 5 GGNRMLSRIKEKYYWKGIKSDVENYIKNCTLC 100
G +M + K+YW ++ VEN ++ C C
Sbjct: 1471 GIKKMWRMVHRKFYWPQMRVCVENCVRTCAKC 1502
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +3
Query: 534 DWPRYVYTAMLSYNTAIHSTTNFSPYELLFGHKAFIPDSIYKQD 665
+W V A+ +YN +H T +P L+ G P + +D
Sbjct: 1645 EWDDQVVYAVYAYNNCVHENTGETPMFLMHGRDVMGPLEMSGED 1688
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +1
Query: 259 TKYSAAYPLRSVSAEETTDCLIH--FISLFGIPNTIFTDQGTNFTSDLFKSTCSFLKIKN 432
TKY A P+ AE + I IP + TDQG F + LF LKI++
Sbjct: 1563 TKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQFTHMLKIEH 1622
Query: 433 LWSTPYHPQSQGALERSHSTL 495
+ + Y+ ++ GA+ER + T+
Sbjct: 1623 ITTKGYNSRANGAVERFNKTI 1643
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 5 GGNRMLSRIKEKYYWKGIKSDVENYIKNCTLC 100
G +M + K+YW ++ VEN ++ C C
Sbjct: 1482 GIKKMWRMVHRKFYWPQMRVCVENCVRTCAKC 1513
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +3
Query: 534 DWPRYVYTAMLSYNTAIHSTTNFSPYELLFGHKAFIPDSIYKQD 665
+W V A+ +YN +H T +P L+ G P + +D
Sbjct: 1656 EWDDQVVYAVYAYNNCVHENTGETPMFLMHGRDVMGPLEMSGED 1699
>AF067216-12|AAL02459.1| 403|Caenorhabditis elegans Hypothetical
protein C35E7.2b protein.
Length = 403
Score = 34.3 bits (75), Expect = 0.090
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 379 NFTSDLFKSTCSFLKIKNLWSTPYHPQSQGALERSHSTLKEYLNH 513
N +LFK F K K ++ P HPQ + + H EY NH
Sbjct: 144 NMEDNLFKQIIDFEKPKEQFTAPPHPQMTHRVAQPHYVPVEYFNH 188
>AF067216-11|AAL02458.1| 707|Caenorhabditis elegans Hypothetical
protein C35E7.2a protein.
Length = 707
Score = 34.3 bits (75), Expect = 0.090
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 379 NFTSDLFKSTCSFLKIKNLWSTPYHPQSQGALERSHSTLKEYLNH 513
N +LFK F K K ++ P HPQ + + H EY NH
Sbjct: 448 NMEDNLFKQIIDFEKPKEQFTAPPHPQMTHRVAQPHYVPVEYFNH 492
>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform g protein.
Length = 1604
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 41 YYWKGIKSDVENYIKNCTLCQENKALRRCNRAPMQITTTSTSPF 172
++W G +S +N+ + T+CQ+ C P ++T PF
Sbjct: 953 FHWGGCQSKSQNFFADMTVCQD-----LCESPPRELTQACLQPF 991
>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform f protein.
Length = 1818
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 41 YYWKGIKSDVENYIKNCTLCQENKALRRCNRAPMQITTTSTSPF 172
++W G +S +N+ + T+CQ+ C P ++T PF
Sbjct: 1167 FHWGGCQSKSQNFFADMTVCQD-----LCESPPRELTQACLQPF 1205
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 41 YYWKGIKSDVENYIKNCTLCQENKALRRCNRAPMQITTTSTSPF 172
++W G +S +N+ + T+CQ+ C P ++T PF
Sbjct: 1303 FHWGGCQSKSQNFFADMTVCQD-----LCESPPRELTQACLQPF 1341
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 41 YYWKGIKSDVENYIKNCTLCQENKALRRCNRAPMQITTTSTSPF 172
++W G +S +N+ + T+CQ+ C P ++T PF
Sbjct: 1352 FHWGGCQSKSQNFFADMTVCQD-----LCESPPRELTQACLQPF 1390
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 41 YYWKGIKSDVENYIKNCTLCQENKALRRCNRAPMQITTTSTSPF 172
++W G +S +N+ + T+CQ+ C P ++T PF
Sbjct: 1344 FHWGGCQSKSQNFFADMTVCQD-----LCESPPRELTQACLQPF 1382
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 41 YYWKGIKSDVENYIKNCTLCQENKALRRCNRAPMQITTTSTSPF 172
++W G +S +N+ + T+CQ+ C P ++T PF
Sbjct: 1355 FHWGGCQSKSQNFFADMTVCQD-----LCESPPRELTQACLQPF 1393
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 41 YYWKGIKSDVENYIKNCTLCQENKALRRCNRAPMQITTTSTSPF 172
++W G +S +N+ + T+CQ+ C P ++T PF
Sbjct: 1356 FHWGGCQSKSQNFFADMTVCQD-----LCESPPRELTQACLQPF 1394
>Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical
protein T25E12.4a protein.
Length = 1101
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 531 DDWPRYVYTAMLSYNTAIHSTTNFS 605
+D+PR YT+M S +T++ +TT FS
Sbjct: 4 NDYPRLYYTSMPSSSTSMVTTTRFS 28
>Z83125-12|CAB05627.1| 302|Caenorhabditis elegans Hypothetical
protein T15D6.1 protein.
Length = 302
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +3
Query: 60 NPMSKIILKIVPYVKKTKPLEGAIEHRCRSLLLPLALSKESHSISSDPYPNQE 218
N K++ IVP+V +K L A E++ S L+P ++S+ + +I Y QE
Sbjct: 27 NSEVKVVDYIVPFVNYSKMLLTAPENQLISCLIPKSMSQLTVNIMCLLYEKQE 79
>Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical
protein T25E12.4a protein.
Length = 1101
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 531 DDWPRYVYTAMLSYNTAIHSTTNFS 605
+D+PR YT+M S +T++ +TT FS
Sbjct: 4 NDYPRLYYTSMPSSSTSMVTTTRFS 28
>Z81147-13|CAB03540.1| 302|Caenorhabditis elegans Hypothetical
protein T15D6.1 protein.
Length = 302
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +3
Query: 60 NPMSKIILKIVPYVKKTKPLEGAIEHRCRSLLLPLALSKESHSISSDPYPNQE 218
N K++ IVP+V +K L A E++ S L+P ++S+ + +I Y QE
Sbjct: 27 NSEVKVVDYIVPFVNYSKMLLTAPENQLISCLIPKSMSQLTVNIMCLLYEKQE 79
>Z81077-4|CAB03071.3| 618|Caenorhabditis elegans Hypothetical
protein F36A2.4 protein.
Length = 618
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 414 LPENKKPLVDAIPSPISRSFREKPFHTQRVPKSFVNDNQDDWPRYVYTAMLSYNTAIHST 593
+ +N K VD + S R R+K + + + KS D DD+ YV T ++ H
Sbjct: 55 IEQNAKDYVDKLWSVAKRD-RDKYKNVEDLIKSVKEDTVDDFNDYVDTVFYAHRAVRHGY 113
Query: 594 TNFSP 608
SP
Sbjct: 114 DEDSP 118
>AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical
protein T25E12.4a protein.
Length = 1101
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 531 DDWPRYVYTAMLSYNTAIHSTTNFS 605
+D+PR YT+M S +T++ +TT FS
Sbjct: 4 NDYPRLYYTSMPSSSTSMVTTTRFS 28
>AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical
protein T25E12.4a protein.
Length = 1101
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 531 DDWPRYVYTAMLSYNTAIHSTTNFS 605
+D+PR YT+M S +T++ +TT FS
Sbjct: 4 NDYPRLYYTSMPSSSTSMVTTTRFS 28
>AF067936-3|AAC19216.2| 922|Caenorhabditis elegans Hypothetical
protein C24G6.3 protein.
Length = 922
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 283 LRSVSAEETTDCLIHFISLFGIPNTIFTDQGTNFTSDLFKSTCSFLKIK 429
++SVS E CL+H S F + FT G FT D+F++ + ++
Sbjct: 163 MKSVSGERDPRCLVHMFSAFLEVSNNFT-LGP-FTEDMFETIACYFPVE 209
>U97592-5|AAB52873.1| 597|Caenorhabditis elegans Hypothetical
protein C14A11.6 protein.
Length = 597
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 325 HFISLFGIPNTIFTDQGTNFTSDLFKSTCSFLKIK 429
H I L G N FTD+ +LFK TCS L+I+
Sbjct: 19 HEIILTGWKNVNFTDENIKHLYNLFK-TCSHLEIR 52
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 28.7 bits (61), Expect = 4.5
Identities = 25/110 (22%), Positives = 48/110 (43%)
Frame = +1
Query: 217 NSETQXCHDTPRRLTKYSAAYPLRSVSAEETTDCLIHFISLFGIPNTIFTDQGTNFTSDL 396
++ TQ T + T S+ P + + + T GIP+T+ T QGT+ TS +
Sbjct: 315 STSTQGISTTTAQATPSSSVIPTTTQTTQRPTST--------GIPSTVSTSQGTSSTSPI 366
Query: 397 FKSTCSFLKIKNLWSTPYHPQSQGALERSHSTLKEYLNHL*TTIKMTGPD 546
+T + + +++ + P L ST+ + T+ K + P+
Sbjct: 367 PSTTQTSSSAPSTYTSNFTPSPTTTL--LTSTIAPSTQGVPTSSKSSSPN 414
>Z99710-6|CAB16869.1| 362|Caenorhabditis elegans Hypothetical
protein F08A8.6 protein.
Length = 362
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 531 DDWPRYVYTAMLSYNTAIHSTTNFSPYEL 617
D WP ++Y + YN +HS N SP+EL
Sbjct: 200 DTWPFFIYIVRMMYN--LHS--NVSPHEL 224
>U40955-4|AAA81752.1| 297|Caenorhabditis elegans Hypothetical
protein F48B9.2 protein.
Length = 297
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 60 NPMSKIILKIVPYVKKTKPLEGAIEHRCRSLLLPLALSKESHS-ISSD 200
N S I+ I PY+K+ + G E S +LP +LS S + SD
Sbjct: 56 NEHSIRIIPIYPYLKQVCEVTGICERTSESAILPASLSNSKLSFVESD 103
>Z50742-5|CAA90618.2| 650|Caenorhabditis elegans Hypothetical
protein K09A11.5 protein.
Length = 650
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +2
Query: 128 NRAPMQITTTSTSPFQRVSLDIVGPLPESGTAKLXYVMTLQDALLNIQQLTHC 286
N AP+ I T+ P S++++G P + T + ++ T Q++ + +Q C
Sbjct: 519 NHAPLGILTSLVFPRIYASIEVIGRSPIALTRERTFIGTDQNSNIPLQNFGVC 571
>AC006645-6|AAF39847.1| 462|Caenorhabditis elegans Hypothetical
protein F56A4.9 protein.
Length = 462
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = +2
Query: 56 IKSDVENY-IKNCTLCQENKALRRCNRAPMQITT--TSTSPFQRVSLDIVGPLPESGTAK 226
+K ++N+ I CTLC+ K + + AP++I + T P +R ++I P + K
Sbjct: 172 LKVILKNWKIAQCTLCEMKKNIFKGGVAPVEILSKCTYNDPKRRNIINIYNPNAFTNVIK 231
Query: 227 LXYVMTL-QDALLNIQQLTHCVVYQLKKL 310
+ L +D + Q++ + + L
Sbjct: 232 IQIEANLHEDFCITTQEMQTFITTEFASL 260
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,926,726
Number of Sequences: 27780
Number of extensions: 367953
Number of successful extensions: 1016
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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