Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120241.Seq
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.9  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.9  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   6.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.0  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 427  KNLWSTPYHPQSQGALERSHSTLKEYLNH 513
            K L S P  PQ Q   ++     ++ LNH
Sbjct: 1441 KTLTSAPQQPQQQQQQQQQQQQQQQQLNH 1469



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 414 LPENKKPLVDAIPSPISRSFREKPFHTQRVPKSFVNDN 527
           LP  + PLV   P   S +  ++P      PK+  ++N
Sbjct: 489 LPPREAPLVGVQPHQDSATPADQPLDLSAKPKNSQDNN 526


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 435 LVDAIPSPISRSFREKPFHTQRVPKSFVNDNQD 533
           +VDA   P+  + +E     Q  P+SF + N D
Sbjct: 14  IVDAAWKPLPENLKEDLIVYQVYPRSFKDSNGD 46


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 483 PFHTQRVPKSFVNDNQDDWPRYVY 554
           PFH QR+   + +   DD  ++VY
Sbjct: 275 PFHVQRLLYVYEDSTYDDINQWVY 298


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 435 LVDAIPSPISRSFREKPFHTQRVPKSFVNDNQD 533
           +VDA   P+  + +E     Q  P+SF + N D
Sbjct: 14  IVDAAWKPLPENLKEDLIVYQVYPRSFKDSNGD 46


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/31 (25%), Positives = 13/31 (41%)
 Frame = +3

Query: 534 DWPRYVYTAMLSYNTAIHSTTNFSPYELLFG 626
           +WP       L+YN  +H       Y ++ G
Sbjct: 354 EWPATTNYLYLTYNGTVHDVEFPGXYTMVIG 384


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +3

Query: 381 LHFRPFQKHLFLPENKKPLVDAIPSPISRSFREKPFHTQR 500
           +HFR  Q H   P  K+  +  +P  +     +  F T R
Sbjct: 331 VHFRSPQTHKMAPWVKRVFIHILPRLLVMRRPQYKFETNR 370


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +3

Query: 381 LHFRPFQKHLFLPENKKPLVDAIPSPISRSFREKPFHTQR 500
           +HFR  Q H   P  K+  +  +P  +     +  F T R
Sbjct: 331 VHFRSPQTHKMAPWVKRVFIHILPRLLVMRRPQYKFETNR 370


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 301 QLIHYAMGKLLNI**GVLECHD 236
           Q +H+    L N+   VLEC D
Sbjct: 34  QSLHFVRASLSNLDMSVLECAD 55


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 301 QLIHYAMGKLLNI**GVLECHD 236
           Q +H+    L N+   VLEC D
Sbjct: 124 QSLHFVRASLSNLDMSVLECAD 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,291
Number of Sequences: 438
Number of extensions: 4890
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)