Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120241.Seq
(725 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g37660.1 68417.m05326 ribosomal protein L12 family protein ri... 29 3.1
At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator... 29 3.1
At1g29100.1 68414.m03562 copper-binding family protein similar t... 28 5.5
At5g25270.1 68418.m02996 expressed protein 28 7.2
At3g49650.1 68416.m05426 kinesin motor protein-related several k... 28 7.2
At4g16045.1 68417.m02434 meprin and TRAF homology domain-contain... 27 9.6
At1g59453.1 68414.m06679 transcription factor-related weak simil... 27 9.6
At1g59077.1 68414.m06670 hypothetical protein 27 9.6
At1g58766.1 68414.m06659 hypothetical protein 27 9.6
>At4g37660.1 68417.m05326 ribosomal protein L12 family protein
ribosomal protein L12, Liberobacter africanum, U09675
Length = 167
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 63 PMSKIILKIVPYVKKTKPLEGAIEHRCRSLLLPLALSKESHSISSD 200
P+S I + + Y+ +T PL A H C ++ P A +K+ I+ D
Sbjct: 4 PISGIFSRSLGYLHRTTPLSSATRHLC-AVASPEARTKKLERIADD 48
>At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator of
chromosome condensation (RCC1) family protein identical
to zinc finger protein PRAF1 [Arabidopsis thaliana]
gi|15811367|gb|AAL08940.
Length = 1103
Score = 29.1 bits (62), Expect = 3.1
Identities = 29/136 (21%), Positives = 57/136 (41%)
Frame = +2
Query: 110 KALRRCNRAPMQITTTSTSPFQRVSLDIVGPLPESGTAKLXYVMTLQDALLNIQQLTHCV 289
+A + +AP I++ S SPF R S P T+ L + + + D + ++ +
Sbjct: 782 RATPKLAQAPSGISSRSVSPFSRRSSPPRSATPMPSTSGLYFPVGIADNMKKTNEILNQE 841
Query: 290 VYQLKKLQTV*STSYPFSEYLILSSLTKALTSLQTFSKALVPS*K*KTFGRRHTIPNLKE 469
+ +L+ + F E + +S+ K +L + S K + I LK+
Sbjct: 842 IVKLRTQVDSLTQKCEFQEVELQNSVKKTQEALALAEEESAKSRAAKE-AIKSLIAQLKD 900
Query: 470 L*REAIPHSKST*IIC 517
+ E +P +S + C
Sbjct: 901 V-AEKLPPGESVKLAC 915
>At1g29100.1 68414.m03562 copper-binding family protein similar to
copper homeostasis factor gi:3168840 from Arabidopsis
thaliana; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 141
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 433 LWSTPYHPQSQGALER 480
LWS PYHP+S G +R
Sbjct: 61 LWSYPYHPESNGYNDR 76
>At5g25270.1 68418.m02996 expressed protein
Length = 540
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 439 STPYHPQSQGALERSHSTLKEYLNHL 516
STP A+ S +TL EYLNHL
Sbjct: 98 STPLASSQPAAIPDSLTTLSEYLNHL 123
>At3g49650.1 68416.m05426 kinesin motor protein-related several
kinesin-like proteins
Length = 813
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 352 NTIFTDQGTNFTSDLFKSTCSFLKIKNLWSTPYHPQSQGALE 477
NTIF ++ +SD F+ TCS+L++ N +S G LE
Sbjct: 129 NTIFDMIKSDKSSDEFEVTCSYLEVYNEVIYDLLEKSSGHLE 170
>At4g16045.1 68417.m02434 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein contains Pfam
profile PF00917: MATH domain
Length = 382
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 161 TSPFQRVSLDIVGPLPESGTAKLXYVMTLQ 250
T P R+ ++ PLPE G+ KL V L+
Sbjct: 282 TDPLLRLERFVLAPLPEMGSPKLLQVSNLR 311
>At1g59453.1 68414.m06679 transcription factor-related weak similarity
to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
Length = 1729
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +1
Query: 283 LRSVSAEETTDCLIHFISLFGIPNTIFTDQGTNFTSDLFKSTCSFLKIKNLWSTPYHPQS 462
L ++ ++ET DC++ + FG+ + L++S FL + + +T QS
Sbjct: 1477 LINIPSQETCDCIVEVLQTFGVALKVNGYDNFRLVHSLYRSK-YFLTLADGGTTQNGQQS 1535
Query: 463 QGA 471
Q A
Sbjct: 1536 QPA 1538
>At1g59077.1 68414.m06670 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +1
Query: 283 LRSVSAEETTDCLIHFISLFGIPNTIFTDQGTNFTSDLFKSTCSFLKIKNLWSTPYHPQS 462
L ++ ++ET DC++ + FG+ + L++S FL + + +T QS
Sbjct: 413 LINIPSQETCDCIVEVLQTFGVALKVNGYDNFRLVHSLYRSK-YFLTLADGGTTQNGQQS 471
Query: 463 QGA 471
Q A
Sbjct: 472 QPA 474
>At1g58766.1 68414.m06659 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +1
Query: 283 LRSVSAEETTDCLIHFISLFGIPNTIFTDQGTNFTSDLFKSTCSFLKIKNLWSTPYHPQS 462
L ++ ++ET DC++ + FG+ + L++S FL + + +T QS
Sbjct: 413 LINIPSQETCDCIVEVLQTFGVALKVNGYDNFRLVHSLYRSK-YFLTLADGGTTQNGQQS 471
Query: 463 QGA 471
Q A
Sbjct: 472 QPA 474
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,011,778
Number of Sequences: 28952
Number of extensions: 344272
Number of successful extensions: 842
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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