Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120240.Seq
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    29   0.66 
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    28   2.0  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   2.7  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.7  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    27   4.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.7  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   4.7  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.2  

>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 17/60 (28%), Positives = 33/60 (55%)
 Frame = +2

Query: 587 GSARLRKRAPQTAQLANRMADIAQDVIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLA 766
           G +++ KRA ++  L   +AD+++ ++   S     HS A+ ++G N    L  +K S+A
Sbjct: 447 GGSQIEKRANESNNLQREIADLSEQIVELESKRNDLHS-ALLEMGGN-LTSLLTKKDSIA 504


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 590 SRFSVASSHNHFVGKQNERSVASAKSAWPP 501
           S FS + SHNH    Q E+S +++K +  P
Sbjct: 537 SPFSKSKSHNHHPSSQVEKSTSNSKGSMLP 566


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +2

Query: 314 LITKSGVIQLIMKSKLPYAIELQEWLL 394
           L+ K GV+ L+ K KLP+++  ++ ++
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMII 568


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 199 STSTASTNRRLSMPTKSSTCSR*RGKAGRPAVFAPTHSAHYQI 327
           S+S+ S++R  S  T   T S  +  + RP VF  T  +HY I
Sbjct: 163 SSSSKSSSRSSSRTTSHRTTSH-KSSSYRPTVFPYTTISHYNI 204


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/62 (22%), Positives = 28/62 (45%)
 Frame = +2

Query: 464 VIAKIDDLTQKLTVATQIWRKQPIAHFVCQRNDCGSTRR*NGSARLRKRAPQTAQLANRM 643
           ++A   +L Q++          P++H++   N  G  ++ +  AR+RK          R+
Sbjct: 221 IMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRL 280

Query: 644 AD 649
           AD
Sbjct: 281 AD 282


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = -2

Query: 647 PPCGWPAAPFAARVFAI----LPSRFSVASSHNHFVGKQNERSVASAKSAWPP 501
           PP  W +  F ++ F      LPSR S  +  +    KQNE   +++  A PP
Sbjct: 686 PPRTWHSPDFTSKSFEPIERKLPSRISEVTEDSIDEDKQNEVDPSTSARALPP 738


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -3

Query: 586 VSASRRATIISLANKMSDRL--LPPNLRGH 503
           V+  RR + ISLAN++S  L   PP+ R H
Sbjct: 683 VTEPRRISAISLANRVSQELGGNPPSARSH 712


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 178 IVNGQYVSTSTASTNRRLSMPTKSSTCS 261
           I  G Y STS +ST+   + P+ SST S
Sbjct: 129 ISGGIYSSTSASSTSSSTATPSSSSTTS 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,554,543
Number of Sequences: 5004
Number of extensions: 73522
Number of successful extensions: 201
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)