Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120240.Seq
(882 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0110 - 5371536-5372882 31 0.93
12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242... 29 3.7
02_05_0886 + 32507324-32507938,32508103-32508252,32508498-325089... 29 3.7
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 29 3.7
12_02_0942 - 24653834-24654046,24654346-24654482,24654626-246549... 29 4.9
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906... 29 4.9
11_06_0263 + 21777178-21777342,21777742-21777823,21777939-217780... 29 6.5
11_04_0191 - 14692104-14692484 28 8.6
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90... 28 8.6
04_01_0044 + 489486-490012,490903-491332 28 8.6
01_03_0010 - 11608537-11608786,11608816-11608940,11609152-116092... 28 8.6
>10_02_0110 - 5371536-5372882
Length = 448
Score = 31.5 bits (68), Expect = 0.93
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Frame = -1
Query: 336 ITPDLVMSTVCGCKY----SG-SPCFATLSGACAGFGRHAQTSICTCRRRGHVLPVHNLH 172
I+PD +S + +Y +G S C+ G+ G R Q S+CT R R H L VH
Sbjct: 320 ISPDGKLSFIVTSRYFDGSAGVSSCYHLAFGSNGGCTRE-QVSVCTWRVRLHELRVHRSD 378
Query: 171 ILNC-WRC 151
+N W C
Sbjct: 379 AMNLRWFC 386
>12_01_0318 -
2425178-2425267,2425830-2426008,2426594-2426654,
2426851-2427160,2428514-2428777,2432595-2433865
Length = 724
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 542 FVCQRNDCGSTRR*NGSARLRKRAP 616
FVC R C RR G ARLR+ +P
Sbjct: 430 FVCSRLACALLRRRRGRARLRRASP 454
>02_05_0886 +
32507324-32507938,32508103-32508252,32508498-32508935,
32509038-32509151,32509256-32509852
Length = 637
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = -2
Query: 632 PAAPFAARVFAIL--PSRFS--VASSHNHFVGKQNERSVASAKSAW 507
PAA A V A++ P++FS +A++ N+F+GK E S + S W
Sbjct: 583 PAA-LAENVGAVMSDPNKFSAAIAAAINNFMGKDGESSSGKSSSKW 627
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +2
Query: 332 VIQLIMKSKLPYAIELQEWLL--EEVIPQV--LCTGKYAPAVEMDTNDVIAKIDDLTQKL 499
V+ ++ + + +EL+E E ++ Q+ ++AP+VE +V A I+ +T+K+
Sbjct: 268 VMAILKNRREKFTLELKELQRKRENLLAQMGDPSANRHAPSVEHSLAEVAAHIEAVTEKI 327
Query: 500 TVATQIWRK 526
+ + W+K
Sbjct: 328 IMEEEKWKK 336
>12_02_0942 -
24653834-24654046,24654346-24654482,24654626-24654959,
24655067-24655153,24655254-24655580
Length = 365
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 611 APQTAQ-LANRMADIAQDVIAKPSNPQLCHSLAVCDVGNNEFAFLRP 748
AP T + L ++M++++ + N C+S+ V D+ NN + RP
Sbjct: 273 APLTKEALESKMSNLSPSCLIDKENVHACYSMMVGDMNNNRRSSKRP 319
>11_03_0026 -
9057965-9058234,9059410-9059522,9059612-9059802,
9060606-9060720,9061781-9061907,9062915-9062990,
9064247-9064365,9065430-9065593,9065666-9065779,
9065966-9066065,9066276-9066340,9068175-9068253,
9069513-9069659,9069904-9070161,9070657-9070852,
9071179-9071402,9072531-9072554
Length = 793
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 334 HARFGNEHCVWVQIQRVALLCHA 266
H FG++H + VQ+Q A++CHA
Sbjct: 203 HIVFGSQHNLPVQLQAKAVICHA 225
>11_06_0263 +
21777178-21777342,21777742-21777823,21777939-21778028,
21778447-21778604,21778852-21778873,21779048-21779175,
21779486-21779685,21780600-21780663,21781594-21781704,
21781804-21781941,21782306-21782448,21782521-21782575,
21782921-21782977,21783093-21783176
Length = 498
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -3
Query: 310 CVWVQIQRVALLCHAIWSMCWIWSACSN 227
C+ V I V CH W +C WS N
Sbjct: 161 CILVLISSVGQSCHKNWVLCIAWSPDGN 188
>11_04_0191 - 14692104-14692484
Length = 126
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 570 RRDAETARQDCENAR-RKRRSWPTAWRT 650
RR + TA C R R+RRS PT WR+
Sbjct: 10 RRSSVTAHGGCGKQRWRQRRSRPTRWRS 37
>04_01_0083 +
904473-905167,905247-905347,905902-905994,907322-907968
Length = 511
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 225 TFEHADQIQHMLQIAWQSRATRCICTHTQCSL 320
+ EH I+H ++I WQ R +C C L
Sbjct: 255 SLEHHQAIRHAVKIGWQKYIKRYLCLAIFCML 286
>04_01_0044 + 489486-490012,490903-491332
Length = 318
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -1
Query: 279 CFATLSGACAGFGRHAQTSICTC 211
C T G C G G + TS C+C
Sbjct: 267 CSPTCKGLCVGCGENLNTSSCSC 289
>01_03_0010 -
11608537-11608786,11608816-11608940,11609152-11609217,
11609741-11609872,11610507-11610608,11610743-11610940,
11611015-11611161,11611321-11611431,11613241-11613780,
11613847-11614003,11614148-11614297,11614375-11614514,
11615346-11615468,11615561-11615677,11617184-11617357,
11617768-11617909,11618076-11618194,11619773-11619955
Length = 991
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +3
Query: 150 DIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQHMLQIAWQSRATRCIC 299
D++S + + + + H+D ++ T E DQ+ ++L I C C
Sbjct: 565 DVSSVIGHYDTSKQNVHHMDNEWWETQERGDQVDYVLDIGEVGPRATCCC 614
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,978,814
Number of Sequences: 37544
Number of extensions: 562546
Number of successful extensions: 1874
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1874
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -