Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120240.Seq
         (882 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.9  
SB_52713| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-26)                 29   3.8  
SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)                 29   3.8  
SB_19726| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_45241| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_3092| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.6  
SB_6738| Best HMM Match : DUF1328 (HMM E-Value=2.4)                    28   8.7  

>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
 Frame = +2

Query: 248 PAHAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSKLPYAIELQEWL-LEEVIP-QVLC 421
           P +    + K   P   HP TVLI    +I L + + L   I LQ  L L+ +IP QVL 
Sbjct: 316 PLYKSSPLYKSSPPTSTHPSTVLIPLQVLIPLQVLTPLQVLIPLQVLLPLQVLIPLQVLI 375

Query: 422 -TGKYAPAVEMDTNDVIAKIDDLTQKLTVATQIWRKQPI 535
                AP   + T  V+  +  LT  L V T +    P+
Sbjct: 376 PLHVLAPLQVVITLQVLTSLQVLT-SLQVLTSLQVLTPL 413


>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -1

Query: 306 CGCKYSGSPCFATLSGACAGFGRHAQTSICTCRRRGHVLPVHNLHILNCWRCPW 145
           C C Y G+     +S   A   R A+  +CT  R   +L  +N  + NC RC +
Sbjct: 175 CVCVYGGTG----ISEQIAELKRGAEIIVCTPGRMIDMLTANNGRVTNCQRCTY 224


>SB_52713| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-26)
          Length = 333

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 259 SMCWIWSACSNVDLYLPSTWTRI 191
           SMC +++ C N+ L++P T+  I
Sbjct: 258 SMCTVYNVCKNIPLHIPQTFLHI 280


>SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)
          Length = 323

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 301 VQIQRVALLCHAIWSMCWIWSACS--NVDLYLPST 203
           V +QRV ++C  +W  C I+SA +   V +Y P T
Sbjct: 157 VTVQRVLIICGGMWVSCSIFSAVTLYGVHVYHPVT 191


>SB_19726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 259 SMCWIWSACSNVDLYLPSTWTRI 191
           SMC +++ C N+ L++P T+  I
Sbjct: 121 SMCTVYNVCKNIPLHIPQTFLHI 143


>SB_45241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 531 RSLILFANEMIVARRDAETARQDCENARRKRRS 629
           RS    AN  I ++RD  T++ DC+ +   +R+
Sbjct: 55  RSTSSLANNTIPSKRDKRTSKHDCDGSANNKRT 87


>SB_3092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 754 TIAGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPR 867
           T+A +S    G+    F+SD  P+S ++L KV +A  +
Sbjct: 94  TVAAKSFGVFGAAFGFFASDTAPSSEDILGKVNDAFKK 131


>SB_6738| Best HMM Match : DUF1328 (HMM E-Value=2.4)
          Length = 391

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = +2

Query: 284 DPLYLHPHTVLITKSGVIQLIMKSKLPYAIELQEWLLEEVIPQVLCTGKYAPAVEMDTND 463
           D + +     L+T+S  I L ++  + +A+    WL  ++   +L  GKY P+     N 
Sbjct: 115 DAMSIDTAASLLTRSQWISLNIQIVVYFAV----WLTFQLFDAILIPGKYMPSGSYQVNW 170

Query: 464 VIAKIDDLTQKLTVATQIW 520
           +I  I++    L + T  W
Sbjct: 171 LI--IENALMWLYIGTPCW 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,990,928
Number of Sequences: 59808
Number of extensions: 618243
Number of successful extensions: 1634
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1632
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)