Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120238.Seq
         (852 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    28   0.082
Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.      24   1.8  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   5.4  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    22   5.4  

>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 28.3 bits (60), Expect = 0.082
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 337 MISYNLVKETGIEIPHSQDVCNDETAAQNCK 429
           M   NL+KE   E+   Q +CN E A   C+
Sbjct: 30  MSDINLIKEEFDELGRLQRICNGEVAVNKCE 60


>Z69742-1|CAA93624.1|   72|Tribolium castaneum arylphorin protein.
          Length = 72

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 512 HICDFVTIVGRKKVWVSFGQVVRNV 586
           H+   + +V R  VWVSF Q  +NV
Sbjct: 22  HMVGTIVVVVRG-VWVSFNQTAQNV 45


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 586 YISYNLPKRNPHFLSPNDCNKVTNVVARNTYLN*NMKS 473
           ++ Y+L  RN     P  CNK        + LN +MKS
Sbjct: 245 HLEYHL--RNHAGSKPFQCNKCDYTCVNKSMLNSHMKS 280


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 586 YISYNLPKRNPHFLSPNDCNKVTNVVARNTYLN*NMKS 473
           ++ Y+L  RN     P  CNK        + LN +MKS
Sbjct: 3   HLEYHL--RNHAGSKPFQCNKCDYTCVNKSMLNSHMKS 38


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,465
Number of Sequences: 336
Number of extensions: 4501
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23555563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)