Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120238.Seq
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    29   0.84 
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    27   3.4  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    27   4.5  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    27   4.5  
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...    26   5.9  

>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
 Frame = +1

Query: 424 CKKCHFVDVHHTFKAA---LTSYFNLDMYYAQ----PHL*LCYNRWAKESVGFFW 567
           C +CH  D +HTF+ A   +  Y  ++ +Y +    PH   C N   K+    +W
Sbjct: 350 CDECHDADQNHTFEHANRIICGYCAMESFYKKDATCPH---CGNMTVKKQTSAYW 401


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 740 QICGGQFNLIVNKKSTLTYKYSSVANLLFN 829
           Q     F L+ N+K  L  KYSS+ N L N
Sbjct: 694 QKLSASFELMSNEKQALELKYSSLKNELIN 723


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = -3

Query: 538 NDCNKVTNVVARNTYLN*NMKSEQL*TCDAHRQNGIFYNFVQPSRRCTHLENEE 377
           N CN++T ++ARN   N  +  ++L +    R   I+ N +Q  R   H++ ++
Sbjct: 209 NLCNQITALLARNG--NPPIPMQKLQSMPPARLISIYQNQIQKFRSLQHMQQQQ 260


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 372 YAGFFNQIVRNHKSNFIKRYH 310
           +  F N I + HK+N+I+ YH
Sbjct: 882 FKNFINVITQLHKTNYIQAYH 902


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 746 IFVWGIVGKLYTFRIL*YLTHIRRYKKIIRCSLNFITLFTTKH 618
           +F  G+   ++  R+L +  HIR  K+I+      + L T KH
Sbjct: 113 VFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKH 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,352,140
Number of Sequences: 5004
Number of extensions: 68127
Number of successful extensions: 196
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)