Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120238.Seq
         (852 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0005 + 30952287-30952762,30952973-30953282                       30   2.0  
09_02_0282 - 6795269-6795564,6795682-6795761,6795873-6795926,679...    30   2.7  
10_07_0079 + 12665141-12665167,12665613-12665702,12665783-126663...    29   4.7  

>03_06_0005 + 30952287-30952762,30952973-30953282
          Length = 261

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +1

Query: 268 EYTNNYYMVDNRVFVVTFDKIRFMISYNLVKETG--IEIPHSQDVCNDETAAQNCKKCHF 441
           E  +   MV +  FV T  K++  + Y+ +  +   I IP+ +     ET A  C    F
Sbjct: 118 EVADKNLMVLSLSFVFTSSKLKHYLLYDAIHASMSMIPIPNWKPRFPKETPASFCHHVKF 177

Query: 442 VDVHHTFKAALT 477
               H F+A LT
Sbjct: 178 TSSSHAFRADLT 189


>09_02_0282 -
           6795269-6795564,6795682-6795761,6795873-6795926,
           6796003-6796081,6796893-6796952,6798152-6798161
          Length = 192

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 235 YICQVRDNVVYEYTNNYYMVDNRVFVVTFD 324
           Y    RDNV +E  ++++MV++R + VT D
Sbjct: 52  YHSSTRDNVGWETNHSWFMVNDRAYHVTID 81


>10_07_0079 +
           12665141-12665167,12665613-12665702,12665783-12666310,
           12666341-12667741
          Length = 681

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -2

Query: 695 YLTHIR-RYKKIIRCSLNFITLFTTKHN 615
           YL H+  R+ KI+ CSLN + L +TKH+
Sbjct: 608 YLRHLTLRHLKIV-CSLNLLRLMSTKHD 634


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,725,064
Number of Sequences: 37544
Number of extensions: 364359
Number of successful extensions: 670
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)