Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120238.Seq
         (852 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23553| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_33958| Best HMM Match : MAM (HMM E-Value=1.1e-32)                   30   2.7  
SB_28221| Best HMM Match : eRF1_3 (HMM E-Value=8.7)                    30   2.7  

>SB_23553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 757

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 424 CKKCHFVDVHHTFKAALTSYFNLDMYYAQPHL 519
           C+ CHF D H      L++++N   YY+ PH+
Sbjct: 137 CRYCHFYDNHRL----LSNHYNNQQYYSLPHM 164


>SB_33958| Best HMM Match : MAM (HMM E-Value=1.1e-32)
          Length = 1052

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +2

Query: 89  THYFTNDFAPYLMRFDDNDYNSNRFSDHMSETGYYMFVVKKSEVKPFE 232
           T+   NDF  YL   +     +  F+DH + TGYY FV       P E
Sbjct: 197 TNEIGNDFDWYLGIGETFSRFTGPFADHTTGTGYYAFVESSKPNNPGE 244


>SB_28221| Best HMM Match : eRF1_3 (HMM E-Value=8.7)
          Length = 348

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/53 (24%), Positives = 29/53 (54%)
 Frame = +1

Query: 223 AV*NYICQVRDNVVYEYTNNYYMVDNRVFVVTFDKIRFMISYNLVKETGIEIP 381
           A+  Y   V+ + +Y+Y ++YY+   R+F V  D+ R +  +   ++  + +P
Sbjct: 297 AIDGYTKAVKASTIYKYADDYYVKIERMFTVKADRDR-LEDFANARQVNLAVP 348


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,535,836
Number of Sequences: 59808
Number of extensions: 493458
Number of successful extensions: 1202
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)