Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120238.Seq
         (852 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061077-1|AAL28625.1|  487|Drosophila melanogaster LD05472p pro...    31   1.5  
AF099184-1|AAD39863.1|  292|Drosophila melanogaster homeobox pro...    31   1.5  
AE013599-571|AAF59147.3|  487|Drosophila melanogaster CG18455-PA...    31   1.5  

>AY061077-1|AAL28625.1|  487|Drosophila melanogaster LD05472p
           protein.
          Length = 487

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -3

Query: 316 LPQTHDYLPCNSCLYIRTPHCHVLGKYNFKRLYFTFFNHKHVITSLGHM 170
           LP  H+ L C + L  R    + +G  NF+ LY    NHK    S G +
Sbjct: 69  LPNMHEILNCEAVLRARAVVAYHVG--NFRELYAIIENHKFTKASYGKL 115


>AF099184-1|AAD39863.1|  292|Drosophila melanogaster homeobox
           protein SIX3 protein.
          Length = 292

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -3

Query: 316 LPQTHDYLPCNSCLYIRTPHCHVLGKYNFKRLYFTFFNHKHVITSLGHM 170
           LP  H+ L C + L  R    + +G  NF+ LY    NHK    S G +
Sbjct: 69  LPNMHEILNCEAVLRARAVVAYHVG--NFRELYAIIENHKFTKASYGKL 115


>AE013599-571|AAF59147.3|  487|Drosophila melanogaster CG18455-PA,
           isoform A protein.
          Length = 487

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -3

Query: 316 LPQTHDYLPCNSCLYIRTPHCHVLGKYNFKRLYFTFFNHKHVITSLGHM 170
           LP  H+ L C + L  R    + +G  NF+ LY    NHK    S G +
Sbjct: 69  LPNMHEILNCEAVLRARAVVAYHVG--NFRELYAIIENHKFTKASYGKL 115


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,015,283
Number of Sequences: 53049
Number of extensions: 713060
Number of successful extensions: 1754
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1754
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4085918148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)