Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120238.Seq
         (852 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t pro...    29   5.5  
U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t pro...    29   5.5  
Z75536-1|CAE17805.1|  195|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U70852-10|AAO91718.1|  505|Caenorhabditis elegans Hypothetical p...    28   7.3  
U70852-9|ABB51183.1|  784|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U70852-8|ABB51182.1|  868|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z35598-3|CAA84655.3|  525|Caenorhabditis elegans Hypothetical pr...    28   9.7  
U50300-8|AAC48105.1|  646|Caenorhabditis elegans Hypothetical pr...    28   9.7  

>U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t
           protein 2, isoform b protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 612 PIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPDNP 734
           P    RKE+ E+E    N     YV Q+    ++ K P NP
Sbjct: 244 PAEWGRKENEELEQIRKNLEPPKYVEQVKAEGDAAKPPVNP 284


>U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t
           protein 2, isoform a protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 612 PIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPDNP 734
           P    RKE+ E+E    N     YV Q+    ++ K P NP
Sbjct: 348 PAEWGRKENEELEQIRKNLEPPKYVEQVKAEGDAAKPPVNP 388


>Z75536-1|CAE17805.1|  195|Caenorhabditis elegans Hypothetical
           protein F18C12.4 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 68  VASTQEITHYFTNDFAPYLMRFDDNDY 148
           V+++Q+++  F  DF P L    DNDY
Sbjct: 145 VSTSQKLSETFERDFDPVLEGMSDNDY 171


>U70852-10|AAO91718.1|  505|Caenorhabditis elegans Hypothetical
           protein F45E4.7b protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 194 CNNQSRTYGRRTC 156
           CNN SR Y RRTC
Sbjct: 492 CNNSSRLYNRRTC 504


>U70852-9|ABB51183.1|  784|Caenorhabditis elegans Hypothetical
           protein F45E4.7c protein.
          Length = 784

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 194 CNNQSRTYGRRTC 156
           CNN SR Y RRTC
Sbjct: 771 CNNSSRLYNRRTC 783


>U70852-8|ABB51182.1|  868|Caenorhabditis elegans Hypothetical
           protein F45E4.7a protein.
          Length = 868

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 194 CNNQSRTYGRRTC 156
           CNN SR Y RRTC
Sbjct: 855 CNNSSRLYNRRTC 867


>Z35598-3|CAA84655.3|  525|Caenorhabditis elegans Hypothetical
           protein F10F2.5 protein.
          Length = 525

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 591 DKNLFTLPIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPD 728
           D   ++  ++LSR+E+  +E  S+  +   Y  QI+K     K PD
Sbjct: 324 DAATWSSAVVLSRRENEGLEVMSDARYAPIYCEQIVKGLSYTKCPD 369


>U50300-8|AAC48105.1|  646|Caenorhabditis elegans Hypothetical
           protein R03H4.6 protein.
          Length = 646

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
 Frame = +1

Query: 235 YICQVRDNVVY--EYTNNYYMVDNRVFVVTFDKIRFMISYNLVKETGIEIPHSQDVCNDE 408
           Y+ Q+ +N+ +  ++    Y++D+   +   + + F + Y + +   +E  H      DE
Sbjct: 515 YLKQMNENIEFYEKFVKKIYILDSHP-LYNLNFLNFFMHYVVQRPDELESLHLNRQKADE 573

Query: 409 T--------AAQNCKKCHFVDVHHTF 462
                    +   CKKC F D+ H F
Sbjct: 574 QMRYVKKRFSMVKCKKCQFYDLSHVF 599


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,644,889
Number of Sequences: 27780
Number of extensions: 387506
Number of successful extensions: 1062
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)