Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120238.Seq
         (852 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    25   1.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   2.0  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    24   2.0  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   8.2  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 375 FYAGFFNQIVRNHKSNFIKRYHK 307
           F  GFFN I    K N  +RYH+
Sbjct: 15  FIIGFFNAISGAIKGNDYQRYHQ 37


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 648  ETASNNFFVSPYVSQILKYSESVKFPDNPPNKYVVDN 758
            E++S++F    Y S + K SES   PD  P +Y++++
Sbjct: 952  ESSSSSF----YSSFLYKSSESSCNPDQKPTEYLLED 984


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +3

Query: 606 TLPIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPDN 731
           TLP +  RK         N F     V+  LK +   +F DN
Sbjct: 72  TLPSLPDRKFQTVTSIEGNTFKTETQVNDSLKVTRLYEFSDN 113


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 630 KESNEIETASNNFFVSPYVSQILKYSESVKFPDNPPNKY 746
           KE   I + SNN+  S Y +    Y+    + +N  N Y
Sbjct: 310 KEPKIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNY 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,718
Number of Sequences: 438
Number of extensions: 4955
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)