Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120238.Seq
         (852 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12420.1 68416.m01547 hypothetical protein                          29   5.2  
At1g62540.1 68414.m07056 flavin-containing monooxygenase family ...    28   6.9  
At5g26180.2 68418.m03115 NOL1/NOP2/sun family protein similar to...    28   9.1  
At5g26180.1 68418.m03114 NOL1/NOP2/sun family protein similar to...    28   9.1  

>At3g12420.1 68416.m01547 hypothetical protein
          Length = 308

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 128 RFDDNDYNSNRFSDHMSETGYY 193
           R+D ND   NR+ DH +E GYY
Sbjct: 117 RYDANDLPPNRYYDHQTE-GYY 137


>At1g62540.1 68414.m07056 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase GB:AAA21178 GI:349534
           from Oryctolagus cuniculus [SP|P32417], SP|P97501 from
           Mus musculus; contains Pfam profile PF00743
           Flavin-binding monooxygenase-like
          Length = 457

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 107 DFAPYLMRFDDNDYNSNRFSDHMSETGY 190
           DF P++ RFDD   +S R+  HM    Y
Sbjct: 90  DF-PFVPRFDDESRDSRRYPSHMEVLAY 116


>At5g26180.2 68418.m03115 NOL1/NOP2/sun family protein similar to
           NOL1R [Homo sapiens] GI:16226071; contains Pfam profile
           PF01189: NOL1/NOP2/sun family
          Length = 567

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = -2

Query: 677 RYKKIIRCSLNFITLFTTKHNRQSK*IFILIHFVQLAQKKPTLSFAQRL*QSHK 516
           +Y  +I+  L+   +  +K  RQ   +FI+ + +   +  P++  A++    HK
Sbjct: 146 KYLTVIKDVLDIANVLNSKWKRQEPLVFIVCYDILFGKDTPSIGDAEKFLMRHK 199


>At5g26180.1 68418.m03114 NOL1/NOP2/sun family protein similar to
           NOL1R [Homo sapiens] GI:16226071; contains Pfam profile
           PF01189: NOL1/NOP2/sun family
          Length = 567

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = -2

Query: 677 RYKKIIRCSLNFITLFTTKHNRQSK*IFILIHFVQLAQKKPTLSFAQRL*QSHK 516
           +Y  +I+  L+   +  +K  RQ   +FI+ + +   +  P++  A++    HK
Sbjct: 146 KYLTVIKDVLDIANVLNSKWKRQEPLVFIVCYDILFGKDTPSIGDAEKFLMRHK 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,842,820
Number of Sequences: 28952
Number of extensions: 328326
Number of successful extensions: 808
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)