Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120237.Seq
         (843 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c...    30   1.8  
U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a...    29   4.1  
AF000265-12|ABQ13076.1|  302|Caenorhabditis elegans Hypothetical...    28   9.5  
AF000265-11|AAK68199.1|  298|Caenorhabditis elegans Hypothetical...    28   9.5  

>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 1 protein.
          Length = 1475

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = +3

Query: 531 ISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKNSD 668
           + K+   +E  +R+R ++ TT   +KY+ EL+   + +D +   ++
Sbjct: 376 VEKEARFSEEMERIRTESQTTSESLKYEHELVRKMMIEDMEKLEAE 421


>U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical protein
            T01C4.1 protein.
          Length = 1484

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 725  GRFDISHYFAQVQCPMGTRLNFIQAVTANVSTIHTDGL 838
            G +D S YF+ V    G R NF+ +V + +     DG+
Sbjct: 1037 GGWDNSQYFSSVAADSGKRRNFVDSVASFIEHHKIDGV 1074


>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 80 protein.
          Length = 4900

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 507 ETPTLLESISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLY 641
           ET  +L+S+  K+ TTE    +   +   +  I+YDS    HY++
Sbjct: 85  ETKLILKSVEDKLETTEIEGNVPKIDENLIENIQYDSGDQEHYIW 129


>AF000265-12|ABQ13076.1|  302|Caenorhabditis elegans Hypothetical
           protein C18E3.9b protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +3

Query: 516 TLLESISKKI--STTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKNSDYA 674
           +++ S+S++   S  +  + +  KNL   NK+K  SE +    +   + K SDYA
Sbjct: 48  SIINSVSEQTLQSWIDFREEINKKNLLLRNKLKIPSEKIDDKYHTFPEKKQSDYA 102


>AF000265-11|AAK68199.1|  298|Caenorhabditis elegans Hypothetical
           protein C18E3.9a protein.
          Length = 298

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +3

Query: 516 TLLESISKKI--STTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKNSDYA 674
           +++ S+S++   S  +  + +  KNL   NK+K  SE +    +   + K SDYA
Sbjct: 48  SIINSVSEQTLQSWIDFREEINKKNLLLRNKLKIPSEKIDDKYHTFPEKKQSDYA 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,188,563
Number of Sequences: 27780
Number of extensions: 256220
Number of successful extensions: 714
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)