Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120236.Seq
(868 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VY28 Cluster: Probable mitochondrial 28S ribosomal pr... 109 7e-23
UniRef50_UPI00005851D0 Cluster: PREDICTED: similar to ENSANGP000... 93 6e-18
UniRef50_P82663 Cluster: Mitochondrial 28S ribosomal protein S25... 84 5e-15
UniRef50_Q9N361 Cluster: Probable mitochondrial 28S ribosomal pr... 68 3e-10
UniRef50_Q5DDM5 Cluster: SJCHGC02544 protein; n=1; Schistosoma j... 63 8e-09
UniRef50_A7S159 Cluster: Predicted protein; n=1; Nematostella ve... 56 1e-06
UniRef50_A7SU42 Cluster: Predicted protein; n=1; Nematostella ve... 44 0.005
>UniRef50_Q9VY28 Cluster: Probable mitochondrial 28S ribosomal
protein S25; n=3; Endopterygota|Rep: Probable
mitochondrial 28S ribosomal protein S25 - Drosophila
melanogaster (Fruit fly)
Length = 167
Score = 109 bits (263), Expect = 7e-23
Identities = 44/83 (53%), Positives = 60/83 (72%)
Frame = +1
Query: 256 VTLKNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXXD 435
+TLKN+TPSPF++CY DDGR +LID+D++++ DI++HL+ VGK+ D
Sbjct: 66 LTLKNMTPSPFVRCYFDDGRDMLIDLDSRNRNDIIDHLVKVVGKTREQLDAEERLKESKD 125
Query: 436 NPANFGVGCDRSCMCEVFGQVPC 504
NPANFG GC R C+CE+ GQVPC
Sbjct: 126 NPANFGYGCGRHCICEIPGQVPC 148
Score = 102 bits (245), Expect = 1e-20
Identities = 43/64 (67%), Positives = 54/64 (84%)
Frame = +2
Query: 62 MPFMKGRAPIRRTLNYLDAGKLVLKDKIKVFSVAYNITGQNNVGTKEFCFWYLPQIQYKN 241
MPFMKGR PIRRTL YL+AGKLVLKDK+++FSV YN G ++ G ++F FW +PQIQ+KN
Sbjct: 1 MPFMKGREPIRRTLKYLNAGKLVLKDKVRIFSVNYNTYGAHHAGARDFVFWNIPQIQFKN 60
Query: 242 PDVQ 253
P+VQ
Sbjct: 61 PEVQ 64
>UniRef50_UPI00005851D0 Cluster: PREDICTED: similar to
ENSANGP00000014061; n=3; Coelomata|Rep: PREDICTED:
similar to ENSANGP00000014061 - Strongylocentrotus
purpuratus
Length = 187
Score = 93.5 bits (222), Expect = 6e-18
Identities = 41/82 (50%), Positives = 56/82 (68%)
Frame = +1
Query: 259 TLKNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXXDN 438
T KN+TPSPFI+C+L++G+++LIDV++K+K+DI+EHL +GKS N
Sbjct: 66 TFKNITPSPFIRCFLNEGKEVLIDVEDKTKDDIVEHLNKVLGKSERVLATERKAMERSSN 125
Query: 439 PANFGVGCDRSCMCEVFGQVPC 504
PANFG R C+CEV GQ PC
Sbjct: 126 PANFGRTYARWCICEVPGQFPC 147
Score = 80.6 bits (190), Expect = 5e-14
Identities = 33/64 (51%), Positives = 50/64 (78%)
Frame = +2
Query: 62 MPFMKGRAPIRRTLNYLDAGKLVLKDKIKVFSVAYNITGQNNVGTKEFCFWYLPQIQYKN 241
MP MKG+ P+RRT+ YL+ GK+ L+D +K+ S+ YN G+ + G ++F F++LPQ+QYKN
Sbjct: 1 MP-MKGKFPLRRTIRYLEQGKIHLRDSVKILSINYNSFGKESDGARDFVFYHLPQLQYKN 59
Query: 242 PDVQ 253
P+VQ
Sbjct: 60 PNVQ 63
>UniRef50_P82663 Cluster: Mitochondrial 28S ribosomal protein S25;
n=23; Coelomata|Rep: Mitochondrial 28S ribosomal protein
S25 - Homo sapiens (Human)
Length = 173
Score = 83.8 bits (198), Expect = 5e-15
Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Frame = +1
Query: 265 KNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXXDNPA 444
KN+TPSPF++ YLD G ++L+DV+ KS ++I+EH+ +GK+ +PA
Sbjct: 68 KNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEEKKQLSHPA 127
Query: 445 NFGVG--CDRSCMCEVFGQVPCSVL 513
NFG C R C+CEV GQVPC L
Sbjct: 128 NFGPRKYCLRECICEVEGQVPCPSL 152
Score = 77.4 bits (182), Expect = 4e-13
Identities = 37/64 (57%), Positives = 45/64 (70%)
Frame = +2
Query: 62 MPFMKGRAPIRRTLNYLDAGKLVLKDKIKVFSVAYNITGQNNVGTKEFCFWYLPQIQYKN 241
MP MKGR PIRRTL YL G +V KD +KV +V YN G+ G ++F F+ +PQIQYKN
Sbjct: 1 MP-MKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKN 59
Query: 242 PDVQ 253
P VQ
Sbjct: 60 PWVQ 63
>UniRef50_Q9N361 Cluster: Probable mitochondrial 28S ribosomal
protein S25; n=2; Caenorhabditis|Rep: Probable
mitochondrial 28S ribosomal protein S25 - Caenorhabditis
elegans
Length = 170
Score = 68.1 bits (159), Expect = 3e-10
Identities = 32/78 (41%), Positives = 46/78 (58%)
Frame = +1
Query: 280 SPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXXDNPANFGVG 459
+PF + YL+DGR++L D+D +E+I + L T+GK+ NPA+FG
Sbjct: 75 TPFARAYLNDGREVLFDLDGMKREEIEKLLAKTLGKTELVERREHLESIAKLNPADFGSK 134
Query: 460 CDRSCMCEVFGQVPCSVL 513
+R CMCEV GQ PC+ L
Sbjct: 135 NERQCMCEVQGQHPCTGL 152
Score = 63.7 bits (148), Expect = 6e-09
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Frame = +2
Query: 62 MPFMKGRAPIRRTLNYLDAGKLVLKDKIKVFSVAY--NITGQNNVGTKEFCFWYLPQIQY 235
MPFM G P+RRT YL GK+ L+D + VFS+ + N T + + G ++F +W Q+QY
Sbjct: 1 MPFMHGSMPLRRTFFYLQQGKVKLRDNVNVFSMGFHKNPTPEQS-GARDFVYWNWAQLQY 59
Query: 236 KNPDVQ 253
NP VQ
Sbjct: 60 HNPKVQ 65
>UniRef50_Q5DDM5 Cluster: SJCHGC02544 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC02544 protein - Schistosoma
japonicum (Blood fluke)
Length = 184
Score = 63.3 bits (147), Expect = 8e-09
Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Frame = +2
Query: 62 MPFMKG-RAPIRRTLNYLDAGKLVLKDKIKVFSVAYNITGQNNVGTKEFCFWYLPQIQYK 238
MPF+KG RA + RT YL+AG+++L D +K+ +++ + G EF WYLP +Q++
Sbjct: 1 MPFLKGGRAAVTRTKKYLEAGRILLNDGVKIIVISHIPGAAISHGCDEFIKWYLPPMQFR 60
Query: 239 NPDVQ 253
NP++Q
Sbjct: 61 NPNIQ 65
Score = 61.7 bits (143), Expect = 2e-08
Identities = 30/84 (35%), Positives = 45/84 (53%)
Frame = +1
Query: 256 VTLKNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXXD 435
+T KN+ P+PFIK Y + ++ ++ + DI +HL HT+
Sbjct: 67 ITFKNMFPTPFIKIYFRNEEQV-VNCAFRRNVDIYDHL-HTLLGKPLPSEHSLMNDLTTK 124
Query: 436 NPANFGVGCDRSCMCEVFGQVPCS 507
NP+NFG R C+CEV+GQ+PCS
Sbjct: 125 NPSNFGTDFPRQCICEVYGQMPCS 148
>UniRef50_A7S159 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 166
Score = 56.0 bits (129), Expect = 1e-06
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 VTLKNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXXD 435
+T K+ T P + + DG+K+++DV+NK +ILE G +
Sbjct: 63 ITAKDRTDFPTVDIFYGDGKKVMVDVENKKAPEILEIFSKVAGATESELQIRRQPKYLGR 122
Query: 436 -NPANFGVGCDRSCMCEVFGQVPC 504
NPANFG C+CE+ GQ PC
Sbjct: 123 INPANFGKYGHMYCICEIPGQAPC 146
Score = 52.4 bits (120), Expect = 1e-05
Identities = 26/60 (43%), Positives = 38/60 (63%)
Frame = +2
Query: 74 KGRAPIRRTLNYLDAGKLVLKDKIKVFSVAYNITGQNNVGTKEFCFWYLPQIQYKNPDVQ 253
KG+ P RRTL +L AG++VLK ++ ++Y ++ G + F + LPQIQYKN VQ
Sbjct: 3 KGKFPFRRTLEFLSAGRVVLKKDVRSVMLSYTHKYESK-GLRNFIYKDLPQIQYKNNAVQ 61
>UniRef50_A7SU42 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 139
Score = 44.0 bits (99), Expect = 0.005
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +2
Query: 74 KGRAPIRRTLNYLDAGKLVLKDKIKVFSVAYNITGQN--NVGTKEFCFWYLPQIQYKNPD 247
+GR + RTL++L + L D + S+ N+ G+ N G K F + +PQ++YKNP
Sbjct: 25 EGRFAVNRTLDHLKRCNVNLPDNVN--SITLNLAGKEKANHGAKRFLYENVPQLKYKNPH 82
Query: 248 VQ 253
VQ
Sbjct: 83 VQ 84
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 804,710,047
Number of Sequences: 1657284
Number of extensions: 15612744
Number of successful extensions: 33112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 31927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33102
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77062818868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -