Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120236.Seq
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    30   0.49 
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    29   0.86 
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   6.0  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   8.0  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    26   8.0  

>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +2

Query: 65  PFMKGRAPIRRTLNYLDAGKLVLKDKIKVFSVAYNIT-GQNNVGTKEFCFWYLPQIQYKN 241
           PF+  RAP R+T +YL   K V KD      +A   T    +    +F    L Q  +++
Sbjct: 4   PFLTFRAPTRKTGDYL-VSKFVKKDNFSSLRLARAYTFSTRSTAVSQFSLLSLSQRSFQS 62

Query: 242 PDVQK*L*KI*RLPL 286
             + K + +  ++PL
Sbjct: 63  LKINKGIPEKHKIPL 77


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = +2

Query: 131 LKDKIKVFSVAYNITGQNNVGTKEFCFWYLPQIQYKNPDVQK 256
           +KD +  F+V Y+  G + V   ++C   LPQI  KNPD QK
Sbjct: 51  VKDPVDFFAV-YDGHGGDKVA--KWCGSNLPQILEKNPDFQK 89


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 19/74 (25%), Positives = 26/74 (35%)
 Frame = +1

Query: 298 YLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXXDNPANFGVGCDRSCM 477
           YL D   I+  VD+K +   L     T+G                 +  N  VG DRS +
Sbjct: 297 YLKDSVHIIDGVDDKEEFKTLLAAFKTLGFDDKENFDLFNILSIILHMGNIDVGADRSGI 356

Query: 478 CEVFGQVPCSVLCH 519
             +        LCH
Sbjct: 357 ARLLNPDEIDKLCH 370


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 529  NFGNGTTQSRAPARKLHTCTIYHIQHQNLQGYPFS 425
            N+ +  T+   P  +L   T  H+QH N +  P S
Sbjct: 985  NYTSAVTELPDPNHQLEMSTTTHVQHPNSETIPSS 1019


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 863 TLYFVYLKKRRYLTNSFILWYTHLCVNPEKHFKF 762
           T+  ++L K RY  N F+L   H C N  + + F
Sbjct: 287 TILLLFLYKIRYPENFFLLRGNHECANITRVYGF 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,530,268
Number of Sequences: 5004
Number of extensions: 72826
Number of successful extensions: 184
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)