Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120236.Seq
         (868 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0744 + 27336697-27337131,27337329-27337787,27340852-273424...    32   0.52 
01_06_1783 + 39845998-39846174,39846260-39846534,39846758-398468...    30   2.1  
05_05_0334 + 24156532-24156565,24156681-24156782,24157145-241572...    29   3.6  
04_04_1284 + 32376870-32376874,32376876-32376935,32377166-323773...    29   3.6  
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373...    29   6.4  
03_06_0285 + 32848085-32848988,32849057-32849245,32850136-328503...    28   8.4  

>03_05_0744 +
           27336697-27337131,27337329-27337787,27340852-27342418,
           27342641-27343044
          Length = 954

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 208 LLVSTANTIQKSRRTKVTLKNLTPSPFIKCYLDDG 312
           ++  T+N I++  R +V L NL P P ++C   +G
Sbjct: 695 MIEGTSNVIEEQERAEVVLSNLCPPPCVECLTVNG 729


>01_06_1783 +
           39845998-39846174,39846260-39846534,39846758-39846891,
           39846992-39847116,39847312-39847494,39847610-39847644,
           39847756-39847912,39847936-39848049,39848143-39848235,
           39848316-39848455,39848606-39848676,39848759-39848839,
           39851475-39851954,39852110-39852387,39853346-39854143
          Length = 1046

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = -3

Query: 284 GEGVKFFKVTFVRLDFCIVFAVDTKSRTLLFLHYFGLLCCRLLKTP*FCLSGLASRHLSS 105
           GE     ++  ++    +VF V T S  LLFL +F       L    FCLSGL   H  +
Sbjct: 246 GEEAADSEIVELQTKTALVFIV-TASLVLLFLFFFKSTWSAWLLVVLFCLSGLQGLHYVA 304

Query: 104 SMCVL 90
           S  ++
Sbjct: 305 STLIV 309


>05_05_0334 + 24156532-24156565,24156681-24156782,24157145-24157274,
            24157361-24157445,24157525-24157666,24157762-24157894,
            24157993-24158254,24158331-24158519,24158596-24158721,
            24158809-24159195,24159288-24159398,24159629-24160423,
            24161114-24161255,24161350-24162518,24162609-24162818,
            24163010-24163478,24164037-24164464
          Length = 1637

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 205  LLLVSTANTIQKSRRTKVTLKNLTPSPFIKCYLDDGRKILIDVDNKSKE 351
            +L   T +TI   R  +VT++++  +  I C  D G K ++  DN S E
Sbjct: 1125 MLSGETEDTISDGRIVQVTVRSIQDNRII-CTFDSGLKAIVMADNYSDE 1172


>04_04_1284 +
           32376870-32376874,32376876-32376935,32377166-32377301,
           32377439-32377596,32377791-32377881,32377975-32378094,
           32378166-32378234,32378354-32378445,32378578-32378680,
           32378761-32378868,32378949-32379011,32379073-32379144,
           32379322-32379399,32379478-32379540,32379617-32379680,
           32379817-32379902,32380456-32380569,32380760-32380837,
           32381068-32381303,32381486-32381576,32381706-32381894,
           32382082-32382117
          Length = 703

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = +1

Query: 196 KRVLLLVSTANTIQKSRRTKVTLKNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHL 369
           K VLLL    N   + R TK+ L+++ P  + +  L D     +DVD   +  +LEHL
Sbjct: 306 KHVLLLEIKGN---QYRPTKIPLRSVRPFHYAEVVLKDE----VDVDPNDQASVLEHL 356


>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
            24737484-24737549,24737629-24737799,24737901-24737999,
            24738075-24738186,24738282-24738343,24738412-24738483,
            24738583-24738681,24738764-24738997,24739104-24739178,
            24739299-24739386,24739478-24739638,24739734-24739841,
            24739934-24741922,24742007-24742279,24742957-24743295,
            24743449-24745038,24745166-24745241,24745333-24745412,
            24745614-24745679,24745761-24745830,24745899-24746134,
            24746149-24746319,24746915-24747097,24747176-24747241,
            24747326-24747389,24747472-24747530,24747612-24747699,
            24747799-24747891,24747956-24748116,24748215-24748307,
            24748405-24748518,24748654-24748773,24748852-24748935,
            24749016-24749171,24749518-24750154,24752874-24752929
          Length = 2815

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = +1

Query: 280  SPFIKCYLDDGRKILIDVDN--KSKEDILEHL 369
            S  I   LDD  KI+ID DN  ++K++++E+L
Sbjct: 1914 SAVIFSLLDDSNKIMIDFDNLKQNKDELMENL 1945


>03_06_0285 +
           32848085-32848988,32849057-32849245,32850136-32850311,
           32850569-32851141
          Length = 613

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 277 PSPFIKCYLDDGRKILIDVDNKS 345
           P+P +K YL+D +KI  + DN S
Sbjct: 394 PAPLLKAYLEDSKKIPSNSDNLS 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,904,169
Number of Sequences: 37544
Number of extensions: 404894
Number of successful extensions: 771
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)