Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120236.Seq
(868 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC003590-1|AAH03590.1| 173|Homo sapiens mitochondrial ribosomal... 84 7e-16
AK024702-1|BAB14968.1| 173|Homo sapiens protein ( Homo sapiens ... 84 7e-16
AK024433-1|BAB15723.1| 192|Homo sapiens FLJ00023 protein protein. 84 7e-16
AB061208-1|BAB54958.1| 33|Homo sapiens mitochondrial ribosomal... 34 0.58
AK023848-1|BAB14700.1| 1867|Homo sapiens protein ( Homo sapiens ... 33 1.8
AF265555-1|AAF75772.1| 4829|Homo sapiens ubiquitin-conjugating B... 33 1.8
AB033115-1|BAA86603.2| 2793|Homo sapiens KIAA1289 protein protein. 33 1.8
>BC003590-1|AAH03590.1| 173|Homo sapiens mitochondrial ribosomal
protein S25 protein.
Length = 173
Score = 83.8 bits (198), Expect = 7e-16
Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Frame = +1
Query: 265 KNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXXDNPA 444
KN+TPSPF++ YLD G ++L+DV+ KS ++I+EH+ +GK+ +PA
Sbjct: 68 KNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEEKKQLSHPA 127
Query: 445 NFGVG--CDRSCMCEVFGQVPCSVL 513
NFG C R C+CEV GQVPC L
Sbjct: 128 NFGPRKYCLRECICEVEGQVPCPSL 152
Score = 77.4 bits (182), Expect = 6e-14
Identities = 37/64 (57%), Positives = 45/64 (70%)
Frame = +2
Query: 62 MPFMKGRAPIRRTLNYLDAGKLVLKDKIKVFSVAYNITGQNNVGTKEFCFWYLPQIQYKN 241
MP MKGR PIRRTL YL G +V KD +KV +V YN G+ G ++F F+ +PQIQYKN
Sbjct: 1 MP-MKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKN 59
Query: 242 PDVQ 253
P VQ
Sbjct: 60 PWVQ 63
>AK024702-1|BAB14968.1| 173|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21049 fis, clone CAS00384. ).
Length = 173
Score = 83.8 bits (198), Expect = 7e-16
Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Frame = +1
Query: 265 KNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXXDNPA 444
KN+TPSPF++ YLD G ++L+DV+ KS ++I+EH+ +GK+ +PA
Sbjct: 68 KNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEEKKQLSHPA 127
Query: 445 NFGVG--CDRSCMCEVFGQVPCSVL 513
NFG C R C+CEV GQVPC L
Sbjct: 128 NFGPRKYCLRECICEVEGQVPCPSL 152
Score = 77.4 bits (182), Expect = 6e-14
Identities = 37/64 (57%), Positives = 45/64 (70%)
Frame = +2
Query: 62 MPFMKGRAPIRRTLNYLDAGKLVLKDKIKVFSVAYNITGQNNVGTKEFCFWYLPQIQYKN 241
MP MKGR PIRRTL YL G +V KD +KV +V YN G+ G ++F F+ +PQIQYKN
Sbjct: 1 MP-MKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKN 59
Query: 242 PDVQ 253
P VQ
Sbjct: 60 PWVQ 63
>AK024433-1|BAB15723.1| 192|Homo sapiens FLJ00023 protein protein.
Length = 192
Score = 83.8 bits (198), Expect = 7e-16
Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Frame = +1
Query: 265 KNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXXDNPA 444
KN+TPSPF++ YLD G ++L+DV+ KS ++I+EH+ +GK+ +PA
Sbjct: 87 KNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEEKKQLSHPA 146
Query: 445 NFGVG--CDRSCMCEVFGQVPCSVL 513
NFG C R C+CEV GQVPC L
Sbjct: 147 NFGPRKYCLRECICEVEGQVPCPSL 171
Score = 77.4 bits (182), Expect = 6e-14
Identities = 37/64 (57%), Positives = 45/64 (70%)
Frame = +2
Query: 62 MPFMKGRAPIRRTLNYLDAGKLVLKDKIKVFSVAYNITGQNNVGTKEFCFWYLPQIQYKN 241
MP MKGR PIRRTL YL G +V KD +KV +V YN G+ G ++F F+ +PQIQYKN
Sbjct: 20 MP-MKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKN 78
Query: 242 PDVQ 253
P VQ
Sbjct: 79 PWVQ 82
>AB061208-1|BAB54958.1| 33|Homo sapiens mitochondrial ribosomal
protein S25 protein.
Length = 33
Score = 34.3 bits (75), Expect = 0.58
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 98 TLNYLDAGKLVLKDKIKVFSVAYNITGQNNVG 193
TL YL G +V KD +KV +V YN G+ G
Sbjct: 1 TLQYLSQGNVVFKDSVKVMTVNYNTHGELGEG 32
>AK023848-1|BAB14700.1| 1867|Homo sapiens protein ( Homo sapiens cDNA
FLJ13786 fis, clone PLACE4000654, highly similar to Mus
musculus mRNA for ubiquitin conjugating enzyme. ).
Length = 1867
Score = 32.7 bits (71), Expect = 1.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 517 GTTQSRAPARKLHTCTIYHIQHQNLQGYPFSQPLTIPNLMFLL 389
G+T A K+ T ++H+ H+ L G P +T+ L+ LL
Sbjct: 958 GSTSGAEAANKIITVPVFHLFHKLLAGQPLPAEMTLAQLLTLL 1000
>AF265555-1|AAF75772.1| 4829|Homo sapiens ubiquitin-conjugating
BIR-domain enzyme APOLLON protein.
Length = 4829
Score = 32.7 bits (71), Expect = 1.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 517 GTTQSRAPARKLHTCTIYHIQHQNLQGYPFSQPLTIPNLMFLL 389
G+T A K+ T ++H+ H+ L G P +T+ L+ LL
Sbjct: 3920 GSTSGAEAANKIITVPVFHLFHKLLAGQPLPAEMTLAQLLTLL 3962
>AB033115-1|BAA86603.2| 2793|Homo sapiens KIAA1289 protein protein.
Length = 2793
Score = 32.7 bits (71), Expect = 1.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 517 GTTQSRAPARKLHTCTIYHIQHQNLQGYPFSQPLTIPNLMFLL 389
G+T A K+ T ++H+ H+ L G P +T+ L+ LL
Sbjct: 1884 GSTSGAEAANKIITVPVFHLFHKLLAGQPLPAEMTLAQLLTLL 1926
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,087,118
Number of Sequences: 237096
Number of extensions: 2380118
Number of successful extensions: 3878
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3875
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11095746082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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