Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120232.Seq
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    28   1.5  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   1.9  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    27   2.6  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   3.4  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    26   4.5  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    26   5.9  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.9  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   7.8  

>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 161 NEKLLNKLESSSYNKSNMDQLIAIVNFLEK 250
           N+++  +L+  +  + N+D L+A VNFL K
Sbjct: 143 NDEINERLKKLTEEQQNVDMLVAKVNFLSK 172


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = +1

Query: 301  KMSKRKKKVINNNKYILFNS---WYTKIKQPEWPSSPAMWDLVKNTPELADFV 450
            K + +K  V+ N   IL NS   W   IK+P   S P   D   N  +L   +
Sbjct: 923  KSNSKKVTVLRNKLNILNNSLSKWKCLIKKPSDFSEPVSMDFTSNDEQLVQLL 975


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 543 CSLELLRCRLKTRCRSVGHFFTHLFSVIKNEHKI 442
           C L+ + CRLK RCR    F   L   I + H I
Sbjct: 56  CRLKEIYCRLKIRCRLKKKFIKSLSKKIISYHFI 89


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = +1

Query: 280  PVMQDERKMSKRKKKVINNNKYILFNSWYTK 372
            P++ + +K+S +  K++ +N Y   N W+ +
Sbjct: 1060 PILPNLQKLSTQYSKIVRDNDYGNVNCWFNR 1090


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 482 KKWPTDRHRVFKRQRSNSSEQKKT 553
           ++W TDR R  KRQ+ NS+E  K+
Sbjct: 27  RRW-TDRARDRKRQKRNSNESSKS 49


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 53  NISSRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQ 220
           ++SS+ +   F    ++    + EQ  S +     K  ++LN L    YN  N DQ
Sbjct: 579 SLSSKHEVDLFTAENEAAREKLVEQLCSLQAQRKQKINEILNLLSMGMYNTINTDQ 634


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 345 VFIVVNHLLLAFGHFAFVLHDRHYVEDIVNVFFSKKFTIAISWSM 211
           ++I +  L LA G FA++  DR+ V+      FS  F  A+  S+
Sbjct: 102 IWITLLILALAVGGFAYIDVDRNLVQGAAMKIFSFTFQTALPISI 146


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 307 SKRKKKVINNNKYILFN-SWYTKIKQPEWP-SSPAMWDLVKNTPEL 438
           S R++ V NNN   +FN S++ KI    +   +  +WD ++N  +L
Sbjct: 232 SLRERFVDNNNSDYIFNVSYHKKIPADGFSLYTREIWDTIENNKDL 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,114
Number of Sequences: 5004
Number of extensions: 66592
Number of successful extensions: 204
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)