Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120232.Seq
(696 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47320| Best HMM Match : Ion_trans (HMM E-Value=2.7e-34) 32 0.51
SB_28312| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_14721| Best HMM Match : Dicty_spore_N (HMM E-Value=6.8) 31 0.89
SB_3005| Best HMM Match : Dicty_spore_N (HMM E-Value=6.8) 31 0.89
SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5) 31 1.2
SB_6631| Best HMM Match : SOCS_box (HMM E-Value=1.5e-10) 30 2.1
SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54) 29 4.8
SB_39888| Best HMM Match : PH (HMM E-Value=3.5e-22) 29 4.8
SB_22629| Best HMM Match : CDC37 (HMM E-Value=3.7) 28 6.3
SB_57364| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_38222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_6135| Best HMM Match : CSD (HMM E-Value=5.4) 28 6.3
SB_48322| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_47320| Best HMM Match : Ion_trans (HMM E-Value=2.7e-34)
Length = 946
Score = 31.9 bits (69), Expect = 0.51
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 422 KTRPNWQILCSFLITLKRWVKKWPTD-RHRVFKRQRSNSSEQKKTDCGAYQCKFGRIKR 595
+TRP+ + CS I+++ W+K+ +H F RS E ++ +CK G + +
Sbjct: 401 QTRPSKERKCSRQISMETWMKREDEQGKHGQFADNRSRHQESPQSSSRQEECKDGIVSK 459
>SB_28312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 31.1 bits (67), Expect = 0.89
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 513 SSDNAAIPASKKRQTAVLTNANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLL 680
S N A P + A ++E+KE C +++ Y++F+ LL ET N A L
Sbjct: 44 SKGNLACPFKARADNTYELRALMSEMKEKCTGKEE-YTKFFKLL-ETINKETAAKL 97
>SB_14721| Best HMM Match : Dicty_spore_N (HMM E-Value=6.8)
Length = 121
Score = 31.1 bits (67), Expect = 0.89
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 513 SSDNAAIPASKKRQTAVLTNANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLL 680
S N A P + A ++E+KE C +++ Y++F+ LL ET N A L
Sbjct: 44 SKGNLACPFKARADNTYELRALMSEMKEKCTGKEE-YTKFFKLL-ETINKETAAKL 97
>SB_3005| Best HMM Match : Dicty_spore_N (HMM E-Value=6.8)
Length = 117
Score = 31.1 bits (67), Expect = 0.89
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 513 SSDNAAIPASKKRQTAVLTNANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLL 680
S N A P + A ++E+KE C +++ Y++F+ LL ET N A L
Sbjct: 40 SKGNLACPFKARADNTYELRALMSEMKEKCTGKEE-YTKFFKLL-ETINKETAAKL 93
>SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)
Length = 139
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 277 MPVMQDERKMSKRKKKVINNNKYILFNSWYTKIK 378
+PV +++ + K NN KY L WY+K++
Sbjct: 7 LPVQNQAKRLRTWRSKTRNNTKYKLICIWYSKVR 40
>SB_6631| Best HMM Match : SOCS_box (HMM E-Value=1.5e-10)
Length = 330
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 491 PTDRHRVFKRQRSNSSEQKKTDCGAYQCKFGRIKREL 601
P D +F+ SN S Q ++ G YQ F R + +L
Sbjct: 239 PEDASMLFELNTSNQSPQSRSTAGVYQLAFSRCQGKL 275
>SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)
Length = 710
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 190 RFQFIQQLFIFAHGRSFCRRLLLRHVYH 107
RF Q I+AH SF +R+LLR + H
Sbjct: 22 RFPRNPQKLIYAHQNSFKKRILLRRIEH 49
>SB_39888| Best HMM Match : PH (HMM E-Value=3.5e-22)
Length = 1067
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +3
Query: 507 VSSSDNAAIPASKKRQTAVLTNANLAELKESCEM 608
VSSS ++ S+KR +AVL + +L +L+ + +M
Sbjct: 452 VSSSSRVSLKRSRKRDSAVLFDISLGDLEGASDM 485
>SB_22629| Best HMM Match : CDC37 (HMM E-Value=3.7)
Length = 504
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 480 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 358
TH SV+K K+C+ RV +Q H R R ++VPT
Sbjct: 395 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 434
>SB_57364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 480 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 358
TH SV+K K+C+ RV +Q H R R ++VPT
Sbjct: 240 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 279
>SB_38222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 480 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 358
TH SV+K K+C+ RV +Q H R R ++VPT
Sbjct: 289 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 328
>SB_6135| Best HMM Match : CSD (HMM E-Value=5.4)
Length = 254
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 480 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 358
TH SV+K K+C+ RV +Q H R R ++VPT
Sbjct: 198 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 237
>SB_48322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -1
Query: 381 LLDLSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHYVEDIVNVFFSKKFT 232
L+ ++ T+K N NH+L F H F + + +E+ V+ F T
Sbjct: 102 LILTTLRTIKGNFMFFENHILAKFLHGKFFIGNPETIEESVDATFEFNLT 151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,851,655
Number of Sequences: 59808
Number of extensions: 512413
Number of successful extensions: 1285
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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