Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120232.Seq
(696 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50110-3|CAA90445.2| 459|Caenorhabditis elegans Hypothetical pr... 30 1.8
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ... 29 2.4
Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 29 3.2
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 29 3.2
Z81508-8|CAI58634.1| 294|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr... 29 4.2
U49830-7|AAM98046.1| 774|Caenorhabditis elegans Neuronal igcam ... 29 4.2
U49830-6|AAK31481.1| 964|Caenorhabditis elegans Neuronal igcam ... 29 4.2
U49830-5|AAK31482.1| 1227|Caenorhabditis elegans Neuronal igcam ... 29 4.2
U49830-4|AAU20850.1| 1196|Caenorhabditis elegans Neuronal igcam ... 29 4.2
AC006641-3|AAF39823.1| 284|Caenorhabditis elegans Hypothetical ... 29 4.2
AY559748-1|AAS72410.1| 671|Caenorhabditis elegans heat shock tr... 28 7.3
AY559747-1|AAS72409.1| 671|Caenorhabditis elegans heat shock tr... 28 7.3
AL033536-5|CAA22146.1| 671|Caenorhabditis elegans Hypothetical ... 28 7.3
Z37092-3|CAA85454.1| 266|Caenorhabditis elegans Hypothetical pr... 27 9.7
>Z50110-3|CAA90445.2| 459|Caenorhabditis elegans Hypothetical
protein F18H3.4 protein.
Length = 459
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/76 (30%), Positives = 35/76 (46%)
Frame = +2
Query: 98 KSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKTLTISST* 277
K N+ EQ TE A+ +N+KLL L + ++ MDQ + N ++K + T
Sbjct: 121 KRNLSARDEQALVTEIDALKRNKKLLESLAEITSHRKGMDQELE-KNRIQKHKVYFELT- 178
Query: 278 CLSCRTNAKCPNARRR 325
SC+ K RR
Sbjct: 179 --SCQNRFKQMKQERR 192
>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
protein K09F6.3 protein.
Length = 1360
Score = 29.5 bits (63), Expect = 2.4
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Frame = +1
Query: 295 ERKMSKRKKKVINNNKYILFNSWYTKIKQP--EWPSSPAMWD---LVKNTPELADFVFIF 459
+++M KK IN + F S K+K W S+ + + ++TP LAD+ IF
Sbjct: 602 DQEMKNTGKKAIN---MVEFGSRLKKLKSELEGWKSNITVGGAHRIRRSTPSLADYAHIF 658
Query: 460 DHTEKMGKKMADRSTSCLQATTQQFQRAKKD 552
+ K+G D L + F++ KD
Sbjct: 659 QNALKVGG--VDDDLKKLMDAVKDFEKTGKD 687
>Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical
protein T06E6.6 protein.
Length = 329
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -1
Query: 399 ATRPLGLLD--LSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHY 274
A PLG+L VPT Q F+ N ++ HF V+ +R+Y
Sbjct: 72 AGTPLGILTEWFEVPTSFQTYFVFTNFFIVMVNHF-LVVENRYY 114
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +2
Query: 95 QKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKTLTISST 274
+ ++ + Q STE + E+ + SSY D+ LE K IS+T
Sbjct: 144 ENEGSIHRSDDQVSTENCSAKDEERDRDSGGVSSYGNKRSDEFCGTSPILEAKGFGISNT 203
Query: 275 *CLSCR 292
C +C+
Sbjct: 204 -CFNCK 208
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +2
Query: 95 QKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKTLTISST 274
+ ++ + Q STE + E+ + SSY D+ LE K IS+T
Sbjct: 144 ENEGSIHRSDDQVSTENCSAKDEERDRDSGGVSSYGNKRSDEFCGTSPILEAKGFGISNT 203
Query: 275 *CLSCR 292
C +C+
Sbjct: 204 -CFNCK 208
>Z81508-8|CAI58634.1| 294|Caenorhabditis elegans Hypothetical
protein F20E11.15 protein.
Length = 294
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Frame = -1
Query: 480 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVP---TVKQNVFIVV---NHLL 319
T LF++I + IC+ G+ ++ P L L+D+ + V ++F+ V N+LL
Sbjct: 186 TLLFAIILSLKLICKAGKTTNKDPTMNRANRLALIDVIIIFFFDVLLSIFLTVFDQNNLL 245
Query: 318 LAFGHFAFVLHD 283
G FA VL +
Sbjct: 246 TNSGPFASVLRE 257
>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
B0024.8 protein.
Length = 1185
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 268 LNVMPVMQDERKMSKRKKKVINNNKYILFN--SWYTKIKQPEWPSSPAMWDLVKNT 429
++++P M K S K++ +Y + ++ +K KQ E + P +WD VKN+
Sbjct: 1083 VSLLPAMTSATKKSNVKQRPFILTQYCELSKLAYKSKPKQVEVMALPLLWDSVKNS 1138
>U49830-7|AAM98046.1| 774|Caenorhabditis elegans Neuronal igcam
protein 6, isoform c protein.
Length = 774
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 236 NFLEKKTLTISST*CLSCRTNAKCPNA 316
NFL+++T+ +S L+C +A+CP A
Sbjct: 214 NFLDEETVNMSCEVELTCENSAECPEA 240
>U49830-6|AAK31481.1| 964|Caenorhabditis elegans Neuronal igcam
protein 6, isoform a protein.
Length = 964
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 236 NFLEKKTLTISST*CLSCRTNAKCPNA 316
NFL+++T+ +S L+C +A+CP A
Sbjct: 404 NFLDEETVNMSCEVELTCENSAECPEA 430
>U49830-5|AAK31482.1| 1227|Caenorhabditis elegans Neuronal igcam
protein 6, isoform b protein.
Length = 1227
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 236 NFLEKKTLTISST*CLSCRTNAKCPNA 316
NFL+++T+ +S L+C +A+CP A
Sbjct: 667 NFLDEETVNMSCEVELTCENSAECPEA 693
>U49830-4|AAU20850.1| 1196|Caenorhabditis elegans Neuronal igcam
protein 6, isoform d protein.
Length = 1196
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 236 NFLEKKTLTISST*CLSCRTNAKCPNA 316
NFL+++T+ +S L+C +A+CP A
Sbjct: 636 NFLDEETVNMSCEVELTCENSAECPEA 662
>AC006641-3|AAF39823.1| 284|Caenorhabditis elegans Hypothetical
protein F45D11.8 protein.
Length = 284
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/74 (24%), Positives = 36/74 (48%)
Frame = -1
Query: 471 FSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPTVKQNVFIVVNHLLLAFGHFAFV 292
+S+I+N + F + + +G+ P L+LS+ ++ V LLA H F
Sbjct: 130 YSLIQNCELLKLFPSLIYLTVYGQDPLPKSFLNLSLEGLELYYIDVTLDELLALNHSEFA 189
Query: 291 LHDRHYVEDIVNVF 250
L ++ ++ +N+F
Sbjct: 190 LSTQNCSDNDINLF 203
>AY559748-1|AAS72410.1| 671|Caenorhabditis elegans heat shock
transcription factor 1 protein.
Length = 671
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +3
Query: 498 IDIVSSSDNAAIPASKKRQTAVLTNANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPL 677
ID +++ A P SK+ + N+ K+ C++ + L E + F NN PL
Sbjct: 289 IDFCAANGTAG-PNSKRARM----NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPL 343
Query: 678 LSSI 689
+S +
Sbjct: 344 ISEV 347
>AY559747-1|AAS72409.1| 671|Caenorhabditis elegans heat shock
transcription factor 1 protein.
Length = 671
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +3
Query: 498 IDIVSSSDNAAIPASKKRQTAVLTNANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPL 677
ID +++ A P SK+ + N+ K+ C++ + L E + F NN PL
Sbjct: 289 IDFCAANGTAG-PNSKRARM----NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPL 343
Query: 678 LSSI 689
+S +
Sbjct: 344 ISEV 347
>AL033536-5|CAA22146.1| 671|Caenorhabditis elegans Hypothetical
protein Y53C10A.12 protein.
Length = 671
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +3
Query: 498 IDIVSSSDNAAIPASKKRQTAVLTNANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPL 677
ID +++ A P SK+ + N+ K+ C++ + L E + F NN PL
Sbjct: 289 IDFCAANGTAG-PNSKRARM----NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPL 343
Query: 678 LSSI 689
+S +
Sbjct: 344 ISEV 347
>Z37092-3|CAA85454.1| 266|Caenorhabditis elegans Hypothetical
protein F44F4.3 protein.
Length = 266
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 110 VNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKT 256
V + E Q E +++CK E +K+E + ++ M + + F E T
Sbjct: 70 VTLEEIQGKRELSSICKMEAYTSKIEDKTKQRNYMATITRQLKFSEALT 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,096,479
Number of Sequences: 27780
Number of extensions: 387592
Number of successful extensions: 1179
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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