Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120232.Seq
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18620.1 68415.m02168 geranylgeranyl pyrophosphate synthase, ...    31   0.73 
At5g27790.1 68418.m03332 protein kinase family protein contains ...    30   1.3  
At2g34290.1 68415.m04195 protein kinase family protein contains ...    30   1.3  
At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) ide...    29   2.9  
At2g27150.1 68415.m03263 aldehyde oxidase 3 (AAO3) identical to ...    29   2.9  
At4g36010.1 68417.m05127 pathogenesis-related thaumatin family p...    28   5.1  
At2g21470.2 68415.m02555 SUMO activating enzyme 2 (SAE2) nearly ...    28   5.1  
At2g21470.1 68415.m02554 SUMO activating enzyme 2 (SAE2) nearly ...    28   5.1  
At2g17860.1 68415.m02069 pathogenesis-related thaumatin family p...    28   5.1  
At2g04080.1 68415.m00391 MATE efflux family protein similar to h...    28   6.8  
At1g11090.1 68414.m01270 hydrolase, alpha/beta fold family prote...    28   6.8  
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein        27   9.0  
At2g38770.1 68415.m04760 expressed protein                             27   9.0  
At2g24810.1 68415.m02968 pathogenesis-related thaumatin family p...    27   9.0  

>At2g18620.1 68415.m02168 geranylgeranyl pyrophosphate synthase,
           putative / GGPP synthetase, putative /
           farnesyltranstransferase, putative similar to gi:413730
           to geranylgeranyl pyrophosphate synthase, chloroplast
           precursor GB:P34802 from [Arabidopsis thaliana]
           synonymous with farnesyltranstransferase
          Length = 347

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +3

Query: 498 IDIVSSSDNAAIPASKKRQTAVLTNANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPL 677
           +D+  SS+     A K      LT   L  L++S +  DKL S+ +  L+   ++ V PL
Sbjct: 276 LDVTKSSEELGKTAGKDLIADKLTYPKLMGLEKSKDFADKLLSDAHEQLHGFDSSRVKPL 335

Query: 678 LS 683
           L+
Sbjct: 336 LA 337


>At5g27790.1 68418.m03332 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 327

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 517 LEDTMSIGRPFFYPSFQCDQK*TQNLPIRACFSPNP 410
           LED M    P F P+  CD K    L +  CF+P P
Sbjct: 244 LEDLMKCYEPLFPPNLPCDAK----LFLMTCFAPEP 275


>At2g34290.1 68415.m04195 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 265

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 517 LEDTMSIGRPFFYPSFQCDQK*TQNLPIRACFSPNP 410
           LED M    P F P+  CD K    L +  CF+P P
Sbjct: 218 LEDLMKCYEPLFPPNLPCDAK----LFLMTCFAPEP 249


>At5g17690.1 68418.m02073 like heterochromatin protein (LHP1)
           identical to like heterochromatin protein LHP1
           [Arabidopsis thaliana] GI:15625407; contains Pfam
           profile PF00385: 'chromo' (CHRromatin Organization
           MOdifier)
          Length = 445

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 373 IKQPEWPSSPAMWDLVKNTPELADFVFIFDHTEKMGK 483
           IK   WP +   W+ ++N   +AD +  F+ + K GK
Sbjct: 127 IKWRGWPETANTWEPLENLQSIADVIDAFEGSLKPGK 163


>At2g27150.1 68415.m03263 aldehyde oxidase 3 (AAO3) identical to
           GP:3172044:gnl:PID:d1029570:AB010080
          Length = 1332

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = -1

Query: 498 SVGHFFTHLFSVIKNEHKICQF-GRVFHQIPHGRATRPLGLLDLSVPTVKQNVFIVVNHL 322
           +VG+ F   + +I++ H+IC       H   H    + L  L  S   ++ N F  +   
Sbjct: 509 AVGYLFEFFYPLIESGHRICSLDSGNKHNNSHVDTVKSLPFLSSSQQVLESNEFKPIGEA 568

Query: 321 LLAFGHFAFVLHDRHYVEDI 262
           ++  G       +  +V+DI
Sbjct: 569 VIKVGAALQASGEAVFVDDI 588


>At4g36010.1 68417.m05127 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 301

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 135 EDCCSGMFTMFDFCKPLKRPACILDDIFF*CPTAWQFVCDEDT 7
           E CCSG F   D CKP +      +     CP A+ +  D+ T
Sbjct: 196 EYCCSGAFGTPDTCKPSEYSQFFKNA----CPRAYSYAYDDGT 234


>At2g21470.2 68415.m02555 SUMO activating enzyme 2 (SAE2) nearly
           identical to SUMO activating enzyme 2 [Arabidopsis
           thaliana] GI:22652854; contains Pfam profiles PF00899:
           ThiF family, PF02134: Repeat in ubiquitin-activating
           (UBA) protein
          Length = 700

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 486 NGRPIDIVSSSDNAAIPASKKRQTAVLTNANLAELKESCEMRD 614
           N  P+D+  SS  +  PASKKR+ +    +N  +  E+ E  D
Sbjct: 639 NENPVDVTESSSGSE-PASKKRRLSETEASNHKKETENVESED 680


>At2g21470.1 68415.m02554 SUMO activating enzyme 2 (SAE2) nearly
           identical to SUMO activating enzyme 2 [Arabidopsis
           thaliana] GI:22652854; contains Pfam profiles PF00899:
           ThiF family, PF02134: Repeat in ubiquitin-activating
           (UBA) protein
          Length = 625

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 486 NGRPIDIVSSSDNAAIPASKKRQTAVLTNANLAELKESCEMRD 614
           N  P+D+  SS  +  PASKKR+ +    +N  +  E+ E  D
Sbjct: 564 NENPVDVTESSSGSE-PASKKRRLSETEASNHKKETENVESED 605


>At2g17860.1 68415.m02069 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 253

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 135 EDCCSGMFTMFDFCKPLKRPACILDDIFF--*CPTAWQFVCDEDT 7
           E CC+G F   D C+P +        +FF   CPTA+ +  D+ T
Sbjct: 195 EFCCNGAFGTPDTCQPSEY------SVFFKKTCPTAYSYAYDDGT 233


>At2g04080.1 68415.m00391 MATE efflux family protein similar to
           hypothetical protein GB:AAC27412; contains Pfam profile
           PF01554: Uncharacterized membrane protein family
          Length = 476

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 332 TTINTFCLTVGTLRSSSPSGLVA 400
           T++ + CLT+GTL    PSG+ A
Sbjct: 287 TSVLSICLTIGTLHYVIPSGVAA 309


>At1g11090.1 68414.m01270 hydrolase, alpha/beta fold family protein
           similar to monoglyceride lipase from [Homo sapiens]
           GI:14594904, [Mus musculus] GI:2632162; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 324

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 392 LVARPCGIW*KTRPNWQILCSFLITLKRWVKKW 490
           LVA  C I  K RP W +   FLI + R++  W
Sbjct: 161 LVAPMCKISDKVRPKWPV-DQFLIMISRFLPTW 192


>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
          Length = 510

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 95  QKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKTLTISS 271
           Q S+    P Q ++ +T   CK    + + +SSS  K   D L  I+   +   L++SS
Sbjct: 130 QFSSADGSPSQSNAWDTTVPCKRRTCVGRPKSSSVEKLTKD-LYNILQEQQSSCLSVSS 187


>At2g38770.1 68415.m04760 expressed protein
          Length = 1509

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
 Frame = +1

Query: 244 GKKDINYILNVMPVMQDERKMSKRKKKVINN--NKYILFNSWYTKIKQPEWPSSPAMWDL 417
           G +D+    NV+   + +    K   + I +  N+Y +   W   +       S A W  
Sbjct: 697 GAEDVYGTFNVLMRRKPKENNFKAILESIRDLMNEYCIVPEWLHNVFLGYGNPSAAQWPN 756

Query: 418 VKNTPELADFVFIFDHTEKMGKKMADRSTSCLQA 519
           + N  E+ DF   F +   + +  +D   S + A
Sbjct: 757 MPNLLEIVDFKDTFLNANHLSESFSDYEVSFINA 790


>At2g24810.1 68415.m02968 pathogenesis-related thaumatin family
           protein similar to thaumatin-like protein [Arabidopsis
           thaliana] GI:2435406; contains Pfam profile PF00314:
           Thaumatin family
          Length = 193

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 135 EDCCSGMFTMFDFCKPLKRPACILDDIFF*CPTAWQFVCD 16
           E CC+G F+  + C P K            CPTA+ +V D
Sbjct: 139 EYCCTGAFSKPETCPPTKYSKIFKGA----CPTAYSYVYD 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,777,872
Number of Sequences: 28952
Number of extensions: 343724
Number of successful extensions: 967
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)