Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120231.Seq
         (864 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    27   0.19 
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    23   2.3  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   4.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   4.1  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    22   7.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   7.1  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.4  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   9.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.4  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 54  KTQQWVTSKTHTSRPETPGPQPPS 125
           +T  W++S +    P TP P PPS
Sbjct: 102 RTDDWLSSPSGNVPPLTPSPGPPS 125


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +1

Query: 460 GKELLCTVLKSCGEECASPSKQTQLSTNKPTQHL 561
           GK+L  T+ ++   +CA  +++ + +  K   HL
Sbjct: 55  GKKLKSTIPEALSTDCAKCNEKVKANVRKVLHHL 88


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
 Frame = -3

Query: 703 SEGEAPRGLRA--PPLYYYSFFKLNLYTIL 620
           S  E  R  R   PP   Y  F L LYT+L
Sbjct: 104 SPDECARACREGEPPRICYYHFTLELYTVL 133


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
 Frame = -3

Query: 703 SEGEAPRGLRA--PPLYYYSFFKLNLYTIL 620
           S  E  R  R   PP   Y  F L LYT+L
Sbjct: 104 SPDECARACREGEPPRICYYHFTLELYTVL 133


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 114 EAPESPVSKCVSSMSPIVV 58
           EAP  PV + + S++P+V+
Sbjct: 55  EAPCDPVGRRLKSLAPLVL 73


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 96   PETPGPQPPSPCNVRPCVKTVSLC*RVVH 182
            P+  GPQP S C+          C R +H
Sbjct: 1268 PKMGGPQPYSACSENAFAAYPGDCTRYLH 1296


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 845 FNNNRMTVRFGQQKL*MPFKILLSITELGRDY 750
           F+NN + +R G++    PF+    I     DY
Sbjct: 194 FDNNEILLRNGEKHHSFPFRKTTEIPPEPEDY 225


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 87  TSRPETPGPQPPSPC 131
           TSRP+   PQP   C
Sbjct: 93  TSRPKLQEPQPSQHC 107


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 515 GDAHSSPQDFSTVHNNSL 462
           GDAH+ P+D +   N S+
Sbjct: 664 GDAHTPPEDDAESLNQSI 681


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 515 GDAHSSPQDFSTVHNNSL 462
           GDAH+ P+D +   N S+
Sbjct: 556 GDAHTPPEDDAESLNQSI 573


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,454
Number of Sequences: 336
Number of extensions: 4779
Number of successful extensions: 20
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23789590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)