Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120231.Seq
(864 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 103 2e-22
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 103 2e-22
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 100 2e-21
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 99 2e-21
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 54 1e-07
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 33 0.39
05_01_0297 - 2314687-2316021 31 0.90
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766... 31 1.6
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 31 1.6
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347... 30 2.1
08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695 29 4.8
08_02_0610 + 19307537-19308011,19308187-19310846 29 4.8
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 29 4.8
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 29 6.3
03_02_0360 - 7796799-7796816,7797477-7797587,7797760-7798068 29 6.3
02_05_0250 + 27153048-27154453,27154546-27154885 29 6.3
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 103 bits (247), Expect = 2e-22
Identities = 45/84 (53%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLG 432
IFNGKK EDI PS+HN DVPHV R +YQL DIS+DG+++L+ ++G+ ++DL++P D L
Sbjct: 83 IFNGKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLPTDDSLL 142
Query: 433 TQLRTDFDSGKELLCTVLKSCGEE 504
Q++T F GK+L+ TV+ + GEE
Sbjct: 143 GQIKTGFGEGKDLVVTVMSAMGEE 166
Score = 84.2 bits (199), Expect = 1e-16
Identities = 38/66 (57%), Positives = 49/66 (74%), Gaps = 5/66 (7%)
Frame = +2
Query: 65 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPC----KIVEMSTSKTGKHGH 229
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPC K+VE+STSKTGKHGH
Sbjct: 14 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKGFGKVVEVSTSKTGKHGH 73
Query: 230 AKVHLV 247
AK H V
Sbjct: 74 AKCHFV 79
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 103 bits (247), Expect = 2e-22
Identities = 46/84 (54%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLG 432
IFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G ++DL++P D L
Sbjct: 1401 IFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKDDLRLPSDEALL 1460
Query: 433 TQLRTDFDSGKELLCTVLKSCGEE 504
TQ++ F GK+L+ TV+ + GEE
Sbjct: 1461 TQIKDGFAEGKDLIVTVMSAMGEE 1484
Score = 75.4 bits (177), Expect = 6e-14
Identities = 38/75 (50%), Positives = 48/75 (64%), Gaps = 14/75 (18%)
Frame = +2
Query: 65 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPC-------------KIVEMS 202
M D E+ HFE+ D+GAS T+P Q +RKNG +++K RPC K+VE+S
Sbjct: 1323 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKWSGNHASLLVDTKVVEVS 1382
Query: 203 TSKTGKHGHAKVHLV 247
TSKTGKHGHAK H V
Sbjct: 1383 TSKTGKHGHAKCHFV 1397
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 100 bits (239), Expect = 2e-21
Identities = 44/85 (51%), Positives = 65/85 (76%), Gaps = 2/85 (2%)
Frame = +1
Query: 256 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLG 432
IFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G+ ++DL++P D L
Sbjct: 66 IFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDDTLT 125
Query: 433 TQLRTDF-DSGKELLCTVLKSCGEE 504
Q++ F + GK+++ TV+ + GEE
Sbjct: 126 NQIKNGFGEEGKDMILTVMSAMGEE 150
Score = 93.5 bits (222), Expect = 2e-19
Identities = 39/63 (61%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Frame = +2
Query: 65 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVH 241
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK+VE+STSKTGKHGHAK H
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 242 LVG 250
VG
Sbjct: 61 FVG 63
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 99 bits (238), Expect = 2e-21
Identities = 43/84 (51%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLG 432
IF KK EDI PS+HN DVPHV R +YQL DIS+DG+++L+ +NG+ ++DL++P D +L
Sbjct: 98 IFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLL 157
Query: 433 TQLRTDFDSGKELLCTVLKSCGEE 504
+Q++ F GK+L+ TV+ + GEE
Sbjct: 158 SQIKDGFGEGKDLVVTVMSAMGEE 181
Score = 55.2 bits (127), Expect(2) = 2e-14
Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = +2
Query: 65 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK 187
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCK 42
Score = 41.9 bits (94), Expect(2) = 2e-14
Identities = 17/21 (80%), Positives = 19/21 (90%)
Frame = +2
Query: 185 KIVEMSTSKTGKHGHAKVHLV 247
K+VE+STSKTGKHGHAK H V
Sbjct: 74 KVVEVSTSKTGKHGHAKCHFV 94
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 54.4 bits (125), Expect = 1e-07
Identities = 25/63 (39%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Frame = +1
Query: 316 HVKREDYQLTDISDDG-YLTLMADNGDLREDLKIPDGD-LGTQLRTDFDSGKELLCTVLK 489
H+ R +YQL DIS+DG +++L+ ++G+ ++DL +P D L Q++T F GK+++ TV+
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKDVVVTVMS 105
Query: 490 SCG 498
+ G
Sbjct: 106 AMG 108
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 32.7 bits (71), Expect = 0.39
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +3
Query: 105 PGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKPE 218
P PQPP PC PC K C + C PKP+
Sbjct: 81 PLPQPPPPCKPPPCEKPPEDC-KPKPCHCCSCEKPKPK 117
>05_01_0297 - 2314687-2316021
Length = 444
Score = 31.5 bits (68), Expect = 0.90
Identities = 23/66 (34%), Positives = 33/66 (50%)
Frame = +1
Query: 340 LTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECASPS 519
+ D + +G L + AD D+R + DGD G +LR F S +LL V S G SP
Sbjct: 91 VVDCTGEGVLFVEAD-ADVRLEELEEDGDGGGELRPPFPSMDQLLLDVEGSGGGVLGSPL 149
Query: 520 KQTQLS 537
Q++
Sbjct: 150 LLVQVT 155
>07_03_0434 +
18175560-18175695,18176068-18176177,18176553-18176616,
18176839-18176915,18177152-18177223,18178337-18178456
Length = 192
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +1
Query: 307 DVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD 426
D P+ RE +++ ++ D Y+T D+G L ED+K+ G+
Sbjct: 38 DFPNFIREGFEVKVVTSDNYIT--RDSGLLYEDIKVGTGN 75
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 66 WVTSKTHTSRPETPGPQPPSPCNV 137
W+T T P+ P P PP PC+V
Sbjct: 52 WLTWPPPTPLPDAPPPPPPHPCDV 75
>01_06_1303 -
36132588-36132710,36133879-36134103,36134318-36134713,
36135352-36135547,36135591-36135740,36135818-36135924,
36135987-36136094,36136354-36136435,36136436-36136536,
36136778-36136996,36137455-36137583,36137665-36137742,
36137816-36137929,36138071-36138230,36139224-36139441
Length = 801
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +2
Query: 26 HIIPDRC*IQNTTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMS 202
H+ +Q ++ D E H T +ATFPM L N + +GR CK V +S
Sbjct: 423 HVADPTSLVQPRSIIDREAMHRGTSIFLPTATFPMFPERLAMNAMSLQQGRGCKSVTVS 481
>08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695
Length = 664
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 415 PDGDLGTQLRTDFDSGKELLCTVLKSCGE 501
PDGDL ++R +SGKEL L G+
Sbjct: 206 PDGDLKDKMRDAMESGKELTSNALALIGK 234
>08_02_0610 + 19307537-19308011,19308187-19310846
Length = 1044
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 91 EVCVFDVTHCCVLNLTTVRNDM 26
+VC FD+ CC L T+ NDM
Sbjct: 835 DVCHFDLRTCCALPPATLENDM 856
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -3
Query: 454 RSQYATVCRGHHPEF*GPHAGHRCQPSGSGSHHPRYQSVGSLRASRGVRPCC 299
+++YA+ HHPE H + S H R+ S G + ASR + C
Sbjct: 150 KNEYASKAEVHHPEILVDHDVYLPPSPSSHDSHERFCSGGVVLASRDGKIVC 201
>05_01_0168 +
1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -2
Query: 536 ESCVCFDGDAHSSPQDFSTVHNNS-LPLSKSVR 441
ESC+CFD D +S D ++N + L L++ ++
Sbjct: 435 ESCLCFDLDLETSTDDACRINNGAILKLAEEIK 467
>03_02_0360 - 7796799-7796816,7797477-7797587,7797760-7798068
Length = 145
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +3
Query: 81 THTSRPETPGPQPPSPCNVRP-CVKTVSLC*RVVHARLLKCPHP 209
T PE P PP C + P C C ++ +LL+ HP
Sbjct: 3 TAKQAPENESPPPPPHCWIYPECTLVTRSCCLLLRLKLLRHGHP 46
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 379 ADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECA 510
A GD DL IPD + TQ+ T+ S C V S G C+
Sbjct: 248 ASTGDRSVDLPIPDNETNTQI-TEMRSNGAEKCDVQLSGGTLCS 290
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,043,446
Number of Sequences: 37544
Number of extensions: 537896
Number of successful extensions: 1811
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1794
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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