Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120231.Seq
         (864 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF187730-1|AAG17032.1|  159|Drosophila melanogaster eukaryotic t...   153   3e-37
AY071396-1|AAL49018.1|  159|Drosophila melanogaster RE47768p pro...   151   9e-37
AF159443-1|AAF80375.1|  159|Drosophila melanogaster eukaryotic i...   151   9e-37
AE013599-3794|AAM68297.1|  159|Drosophila melanogaster CG3186-PB...   151   9e-37
AE013599-3793|AAF47151.1|  159|Drosophila melanogaster CG3186-PA...   151   9e-37
AY121665-1|AAM51992.1|  709|Drosophila melanogaster RE10861p pro...    31   2.7  
AE014296-2303|AAF49800.1|  709|Drosophila melanogaster CG10710-P...    31   2.7  
AE014296-410|ABI31230.1| 3651|Drosophila melanogaster CG33484-PD...    30   4.7  

>AF187730-1|AAG17032.1|  159|Drosophila melanogaster eukaryotic
           translation initiationfactor 5a protein.
          Length = 159

 Score =  153 bits (371), Expect = 3e-37
 Identities = 67/84 (79%), Positives = 76/84 (90%)
 Frame = +1

Query: 256 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGT 435
           IF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM D+GDLREDLK+P+G+LG 
Sbjct: 64  IFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTDSGDLREDLKVPEGELGE 123

Query: 436 QLRTDFDSGKELLCTVLKSCGEEC 507
           QLR DFDSGK+LLCTVLK+CGEEC
Sbjct: 124 QLRLDFDSGKDLLCTVLKACGEEC 147



 Score =  115 bits (277), Expect = 7e-26
 Identities = 52/62 (83%), Positives = 57/62 (91%)
 Frame = +2

Query: 65  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 244
           M +++D HFET DSGAS T+PMQCSALRKNGFVMLK RPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-HFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 245 VG 250
           VG
Sbjct: 60  VG 61


>AY071396-1|AAL49018.1|  159|Drosophila melanogaster RE47768p
           protein.
          Length = 159

 Score =  151 bits (367), Expect = 9e-37
 Identities = 66/84 (78%), Positives = 76/84 (90%)
 Frame = +1

Query: 256 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGT 435
           IF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLREDLK+P+G+LG 
Sbjct: 64  IFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEGELGE 123

Query: 436 QLRTDFDSGKELLCTVLKSCGEEC 507
           QLR DFDSGK+LLCTVLK+CGEEC
Sbjct: 124 QLRLDFDSGKDLLCTVLKACGEEC 147



 Score =  112 bits (269), Expect = 7e-25
 Identities = 51/62 (82%), Positives = 56/62 (90%)
 Frame = +2

Query: 65  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 244
           M +++D  FET DSGAS T+PMQCSALRKNGFVMLK RPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-QFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 245 VG 250
           VG
Sbjct: 60  VG 61


>AF159443-1|AAF80375.1|  159|Drosophila melanogaster eukaryotic
           initiation factor 5A protein.
          Length = 159

 Score =  151 bits (367), Expect = 9e-37
 Identities = 66/84 (78%), Positives = 76/84 (90%)
 Frame = +1

Query: 256 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGT 435
           IF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLREDLK+P+G+LG 
Sbjct: 64  IFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEGELGE 123

Query: 436 QLRTDFDSGKELLCTVLKSCGEEC 507
           QLR DFDSGK+LLCTVLK+CGEEC
Sbjct: 124 QLRLDFDSGKDLLCTVLKACGEEC 147



 Score =  115 bits (277), Expect = 7e-26
 Identities = 52/62 (83%), Positives = 57/62 (91%)
 Frame = +2

Query: 65  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 244
           M +++D HFET DSGAS T+PMQCSALRKNGFVMLK RPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-HFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 245 VG 250
           VG
Sbjct: 60  VG 61


>AE013599-3794|AAM68297.1|  159|Drosophila melanogaster CG3186-PB,
           isoform B protein.
          Length = 159

 Score =  151 bits (367), Expect = 9e-37
 Identities = 66/84 (78%), Positives = 76/84 (90%)
 Frame = +1

Query: 256 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGT 435
           IF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLREDLK+P+G+LG 
Sbjct: 64  IFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEGELGE 123

Query: 436 QLRTDFDSGKELLCTVLKSCGEEC 507
           QLR DFDSGK+LLCTVLK+CGEEC
Sbjct: 124 QLRLDFDSGKDLLCTVLKACGEEC 147



 Score =  112 bits (269), Expect = 7e-25
 Identities = 51/62 (82%), Positives = 56/62 (90%)
 Frame = +2

Query: 65  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 244
           M +++D  FET DSGAS T+PMQCSALRKNGFVMLK RPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-QFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 245 VG 250
           VG
Sbjct: 60  VG 61


>AE013599-3793|AAF47151.1|  159|Drosophila melanogaster CG3186-PA,
           isoform A protein.
          Length = 159

 Score =  151 bits (367), Expect = 9e-37
 Identities = 66/84 (78%), Positives = 76/84 (90%)
 Frame = +1

Query: 256 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGT 435
           IF+ KKYEDICPSTHNMDVP+VKRED QL  ISDD +LTLM ++GDLREDLK+P+G+LG 
Sbjct: 64  IFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEGELGE 123

Query: 436 QLRTDFDSGKELLCTVLKSCGEEC 507
           QLR DFDSGK+LLCTVLK+CGEEC
Sbjct: 124 QLRLDFDSGKDLLCTVLKACGEEC 147



 Score =  112 bits (269), Expect = 7e-25
 Identities = 51/62 (82%), Positives = 56/62 (90%)
 Frame = +2

Query: 65  MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 244
           M +++D  FET DSGAS T+PMQCSALRKNGFVMLK RPCKIVEMSTSKTGKHGHAKVH+
Sbjct: 1   MAELDD-QFETTDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHM 59

Query: 245 VG 250
           VG
Sbjct: 60  VG 61


>AY121665-1|AAM51992.1|  709|Drosophila melanogaster RE10861p
           protein.
          Length = 709

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 216 PVLDVDIST-ILHGRPFSITKPFLRRAEHCMGKVAEAPESPVSKCVSSMSPI 64
           P    D+S  +LH  P S T   L  + + +   A AP SP S+C SS SP+
Sbjct: 552 PAPSTDLSPELLHISPESPTSTLLLPSSNHL-VAAVAPHSPASQCSSSQSPM 602


>AE014296-2303|AAF49800.1|  709|Drosophila melanogaster CG10710-PA
           protein.
          Length = 709

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 216 PVLDVDIST-ILHGRPFSITKPFLRRAEHCMGKVAEAPESPVSKCVSSMSPI 64
           P    D+S  +LH  P S T   L  + + +   A AP SP S+C SS SP+
Sbjct: 552 PAPSTDLSPELLHISPESPTSTLLLPSSNHL-VAAVAPHSPASQCSSSQSPM 602


>AE014296-410|ABI31230.1| 3651|Drosophila melanogaster CG33484-PD,
            isoform D protein.
          Length = 3651

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 57   TQQWVTSKTHTSRPETPGPQPPSPCNVRPCVKT 155
            TQ  +T+ T T+  + P P PP PC   P V T
Sbjct: 2438 TQPTITNTTTTNTTKVPPPVPPKPCT--PVVAT 2468


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,648,646
Number of Sequences: 53049
Number of extensions: 923488
Number of successful extensions: 2749
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2745
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4168047156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)