Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120231.Seq
         (864 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...   109   2e-24
Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...    99   5e-21
CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical ...    31   1.1  
AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear recep...    30   1.9  
AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear recep...    30   1.9  
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    30   1.9  
AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormo...    30   1.9  
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    29   3.2  
Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical pr...    28   9.9  
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    28   9.9  

>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score =  109 bits (262), Expect = 2e-24
 Identities = 48/57 (84%), Positives = 52/57 (91%)
 Frame = +2

Query: 77  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLV 247
           +D HF TGDSGA+ATFP QCSALRKN  VM+KGRPCKIVEMSTSKTGKHGHAKVH+V
Sbjct: 7   DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMV 63



 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 43/85 (50%), Positives = 59/85 (69%), Gaps = 2/85 (2%)
 Frame = +1

Query: 256 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLG 432
           IF  KK EDICPSTHNMDVP VKR +Y L  I DDGY +LM  ++ + ++DLK+PD +LG
Sbjct: 67  IFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELG 125

Query: 433 TQLRTDFDSGK-ELLCTVLKSCGEE 504
            Q+R  ++  +  +L  V+ + GEE
Sbjct: 126 QQIRDAYEKDEGSVLVQVVSAIGEE 150


>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score = 98.7 bits (235), Expect = 5e-21
 Identities = 42/57 (73%), Positives = 51/57 (89%)
 Frame = +2

Query: 77  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLV 247
           ++  F++ +SGA+ATFP QCSALRKN  VM++GRPCKIVEMSTSKTGKHGHAKVH+V
Sbjct: 41  DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMV 97



 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 43/85 (50%), Positives = 60/85 (70%), Gaps = 2/85 (2%)
 Frame = +1

Query: 256 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLG 432
           IF  KK EDICPSTHNMDVP VKR +Y L  I +DG+ +LM  ++ +L++DLK+P+GDLG
Sbjct: 101 IFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLG 159

Query: 433 TQLRTDFDSGK-ELLCTVLKSCGEE 504
             +R   +  +  +L  V+ +CGEE
Sbjct: 160 NTIREALEKDEGSVLVQVVAACGEE 184


>CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical
           protein K09E10.2 protein.
          Length = 695

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +1

Query: 301 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD-FDSGKEL 471
           N  +P +K++ Y L     ++ GY+  +   GDL+   KI D      LR D ++ G+  
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKA-MLRPDGYERGRLR 629

Query: 472 LCTVLKSCGEEC 507
              ++K CG++C
Sbjct: 630 HAALVKECGDKC 641


>AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 486

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +3

Query: 42  VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 158
           V+K  T + ++S T      T+   TPGP P +PC+  P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192


>AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 350

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +3

Query: 42  VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 158
           V+K  T + ++S T      T+   TPGP P +PC+  P V T+
Sbjct: 13  VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 56


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +3

Query: 42  VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 158
           V+K  T + ++S T      T+   TPGP P +PC+  P V T+
Sbjct: 167 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 210


>AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform a protein.
          Length = 486

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +3

Query: 42  VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 158
           V+K  T + ++S T      T+   TPGP P +PC+  P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 72  TSKTHTSRPETPGPQPPSPCNVRP 143
           T K  T R E+P P PP P   RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381


>Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical
           protein F32D8.2 protein.
          Length = 568

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
 Frame = +1

Query: 256 IFNGKKYEDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 411
           IF   + ED+   T +    H+ R + ++       D+S DGYLTL + N  DL  D++
Sbjct: 74  IFFPNEDEDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132


>Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical
           protein R11A8.8 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 361 GYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLC 477
           GYL      GD ++++K+ +G    Q+ +D D  K   C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 159 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 67
           +P  +R+++C G + E  E  ++KC  +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,361,896
Number of Sequences: 27780
Number of extensions: 453297
Number of successful extensions: 1333
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)