Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120231.Seq
(864 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g13950.1 68414.m01639 eukaryotic translation initiation facto... 106 2e-23
At1g69410.1 68414.m07972 eukaryotic translation initiation facto... 103 2e-22
At1g26630.1 68414.m03243 eukaryotic translation initiation facto... 102 4e-22
At3g06450.1 68416.m00746 anion exchange family protein similar t... 32 0.57
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 29 3.0
At5g14230.1 68418.m01663 ankyrin repeat family protein contains ... 29 4.0
At5g41460.1 68418.m05035 fringe-related protein strong similarit... 29 5.3
At5g13880.1 68418.m01622 expressed protein 29 5.3
At5g03140.1 68418.m00262 lectin protein kinase family protein co... 29 5.3
At2g27680.1 68415.m03354 aldo/keto reductase family protein cont... 29 5.3
At5g05810.1 68418.m00639 zinc finger (C3HC4-type RING finger) fa... 28 9.2
At3g53330.1 68416.m05884 plastocyanin-like domain-containing pro... 28 9.2
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 28 9.2
>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Arabidopsis thaliana}
Length = 158
Score = 106 bits (255), Expect = 2e-23
Identities = 47/84 (55%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD-LG 432
IF KK EDI PS+HN DVPHV R DYQL DIS+DGY++L+ DNG ++DLK+P+ D L
Sbjct: 64 IFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLL 123
Query: 433 TQLRTDFDSGKELLCTVLKSCGEE 504
Q+++ FD GK+L+ +V+ + GEE
Sbjct: 124 QQIKSGFDDGKDLVVSVMSAMGEE 147
Score = 91.9 bits (218), Expect = 5e-19
Identities = 36/57 (63%), Positives = 47/57 (82%)
Frame = +2
Query: 77 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLV 247
E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK+VE+STSKTGKHGHAK H V
Sbjct: 4 EEHHFESSDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFV 60
>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similarity to
eukaryotic initiation factor 5A (2) (Nicotiana
plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Lycopersicon esculentum}
Length = 158
Score = 103 bits (247), Expect = 2e-22
Identities = 46/84 (54%), Positives = 63/84 (75%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLG 432
IF KK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ DNG ++DLK+P D L
Sbjct: 64 IFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALL 123
Query: 433 TQLRTDFDSGKELLCTVLKSCGEE 504
TQL+ F+ GK+++ +V+ + GEE
Sbjct: 124 TQLKNGFEEGKDIVVSVMSAMGEE 147
Score = 88.2 bits (209), Expect = 6e-18
Identities = 35/57 (61%), Positives = 46/57 (80%)
Frame = +2
Query: 77 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLV 247
++ HFE+ D+GAS T+P Q +RK G +++KGRPCK+VE+STSKTGKHGHAK H V
Sbjct: 4 DEHHFESSDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFV 60
>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similariy to
SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
(eIF-5A 1) {Lycopersicon esculentum}
Length = 159
Score = 102 bits (244), Expect = 4e-22
Identities = 45/84 (53%), Positives = 62/84 (73%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLG 432
IF KK EDI PS+HN DVPHV R DYQL DI++DG+++L+ D+G ++DLK+P D L
Sbjct: 64 IFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLT 123
Query: 433 TQLRTDFDSGKELLCTVLKSCGEE 504
Q+R FD GK+++ +V+ S GEE
Sbjct: 124 AQMRLGFDEGKDIVVSVMSSMGEE 147
Score = 83.0 bits (196), Expect = 2e-16
Identities = 33/57 (57%), Positives = 43/57 (75%)
Frame = +2
Query: 77 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLV 247
++ HFE +SGAS T+P +RK G +++K RPCK+VE+STSKTGKHGHAK H V
Sbjct: 4 DEHHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFV 60
>At3g06450.1 68416.m00746 anion exchange family protein similar to
putative Anion exchanger family members: GB:AAD39673,
GB:AAD55295 [Arabidopsis thaliana]
Length = 732
Score = 31.9 bits (69), Expect = 0.57
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 718 IASDVSEGEAPRGLRAPPLYYYSFFKLNLYTILC 617
+AS +++ E LR PP Y+Y F L TILC
Sbjct: 316 VASQLAQQE-DFNLRKPPAYHYDLFLLGFLTILC 348
>At3g59820.1 68416.m06675 calcium-binding mitochondrial
protein-related contains weak similarity to
Calcium-binding mitochondrial protein Anon-60Da
(Swiss-Prot:P91927) [Drosophila melanogaster]
Length = 755
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 135 VRPCVKTVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLYLQW 266
+ P +K V+ R A+ K H K E +TLK WLG L W
Sbjct: 182 IGPAIKAVASMNRADWAK--KLTHWKHEFVSTLKHYWLGTKLLW 223
>At5g14230.1 68418.m01663 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 591
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +1
Query: 406 LKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEEC 507
L IPDGD T L G +C L SCG C
Sbjct: 412 LDIPDGDGYTPLMLAAREGHGHMCEYLISCGANC 445
>At5g41460.1 68418.m05035 fringe-related protein strong similarity
to unknown protein (pir||T13026) similarity to predicted
proteins + similar to hypothetical protein GB:AAC23643
[Arabidopsis thaliana] + weak similarity to Fringe
[Schistocerca gregaria](GI:6573138);Fringe encodes an
extracellular protein that regulates Notch signalling.
Length = 524
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 42 VVKFKTQQWVTSKTHTSRPETPGPQPPSP 128
++ F T Q K++ S P +P P PP P
Sbjct: 80 LILFHTNQTAVIKSYASPPPSPPPPPPPP 108
>At5g13880.1 68418.m01622 expressed protein
Length = 188
Score = 28.7 bits (61), Expect = 5.3
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = +3
Query: 6 VEEPVGHISFLTVVKFKTQQWVTSKTHTSRPETPGP 113
+E+ + ++ L + +F Q W+ + P+TP P
Sbjct: 150 LEDEIDKVADLFITRFHRQMWLQKQLSLESPDTPSP 185
>At5g03140.1 68418.m00262 lectin protein kinase family protein
contains Pfam domains, PF00138: Legume lectins alpha
domain, PF00139: Legume lectins beta domain and PF00069:
Protein kinase domain
Length = 711
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 177 RPFSITKPFLRRAEHCMGKVAEAPESPVSKCVSSMS 70
+P +T+P +R + A+ PE P++K SSMS
Sbjct: 631 QPDPVTRPTMRSVVQILVGEADVPEVPIAKPSSSMS 666
>At2g27680.1 68415.m03354 aldo/keto reductase family protein
contains Pfam profile PF00248: oxidoreductase, aldo/keto
reductase family
Length = 384
Score = 28.7 bits (61), Expect = 5.3
Identities = 26/95 (27%), Positives = 44/95 (46%)
Frame = +1
Query: 277 EDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFD 456
++I S MDV + + D ++DGYL + DL+E +G + T T+FD
Sbjct: 147 QNIDISRKRMDVAALDMLQFHWWDYANDGYLDALKHLTDLKE-----EGKIKTVALTNFD 201
Query: 457 SGKELLCTVLKSCGEECASPSKQTQLSTNKPTQHL 561
+ E L +L++ G S Q + +P Q +
Sbjct: 202 T--ERLQKILEN-GIPVVSNQVQHSIVDMRPQQRM 233
>At5g05810.1 68418.m00639 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 353
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 779 LSITELGRDYGTRRRIEGVRYCE*RQRGGGAPRSPSTTSVL 657
L+ E GRD R + + E R+R GG PR T+V+
Sbjct: 297 LAAAEGGRDVINGRSVSELTGIERRRRWGGEPRQRQATAVI 337
>At3g53330.1 68416.m05884 plastocyanin-like domain-containing
protein similar to mavicyanin SP:P80728 from [Cucurbita
pepo]
Length = 310
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/18 (72%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +3
Query: 75 SKTHT-SRPETPGPQPPS 125
SKTH SRP TP P PPS
Sbjct: 127 SKTHERSRPITPSPPPPS 144
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Frame = +3
Query: 78 KTHTSRPETPGPQPPS---PCNVRPCVKTVSLC*RVVHARLLKCP 203
KT T P PP PCN PC S + + R CP
Sbjct: 22 KTTTKPTAAAAPSPPDIHCPCNAGPCNTVTSKTEKNPNRRFYTCP 66
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,945,861
Number of Sequences: 28952
Number of extensions: 416011
Number of successful extensions: 1177
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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