Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120230X.Seq
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   1.3  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.3  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    25   5.1  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   5.1  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.7  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   6.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.9  

>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +2

Query: 317 LITKSGVIQLIMKSKLPYAIELQEWLL 397
           L+ K GV+ L+ K KLP+++  ++ ++
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMII 568


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 202 STSTASTNRRLSMPTKSRPCSR*RGKAGRPAVFAPTHSAHYQI 330
           S+S+ S++R  S  T  R  S  +  + RP VF  T  +HY I
Sbjct: 163 SSSSKSSSRSSSRTTSHRTTSH-KSSSYRPTVFPYTTISHYNI 204


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -3

Query: 343 LNHARFGNEHCVWVQIQRVALLCHAIWSMVWIWSACSNVDLYLPSTW 203
           L+ + FG    +W  + R  L C  +W  V  W     V L + S W
Sbjct: 123 LSRSSFGTWGSLWPILNRSVLAC--VWYGVQAWIGGECVVLMIRSIW 167


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 120 GDEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHAD 245
           GDE     V+ D  S    V+  +   ++  GKY+ TF H D
Sbjct: 48  GDEIECIVVSMDDKSKKARVSLRQEDILNALGKYEETFRHVD 89


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 201 HVLPVHNLHILNCW 160
           HVLP+  L +LNC+
Sbjct: 405 HVLPIRQLFLLNCY 418


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 243 RHAQTSICTCRRRGHVLPVHNLHILN 166
           R A T +   R    +LPVH LH+ +
Sbjct: 776 RQAMTRLKGLRETNSILPVHQLHMFH 801


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 60   QVKIGQFKFGQDEFTLRYVLGDEQPVRFV 146
            Q+KI   +F   E TLR++  DE+  RF+
Sbjct: 3950 QIKILPSRFTNIEDTLRFLRHDEEAKRFL 3978


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,665
Number of Sequences: 5004
Number of extensions: 47824
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)