Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120230X.Seq
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0110 - 5371536-5372882                                           31   0.55 
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906...    29   2.2  
01_06_1510 - 37859664-37861319                                         28   5.1  
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422...    27   6.8  
11_01_0640 - 5142578-5142628,5142780-5143139,5144180-5144356           27   8.9  

>10_02_0110 - 5371536-5372882
          Length = 448

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
 Frame = -1

Query: 339 ITPDLVMSTVCGCKY----SG-SPCFATLSGAWSGFGRHAQTSICTCRRRGHVLPVHNLH 175
           I+PD  +S +   +Y    +G S C+    G+  G  R  Q S+CT R R H L VH   
Sbjct: 320 ISPDGKLSFIVTSRYFDGSAGVSSCYHLAFGSNGGCTRE-QVSVCTWRVRLHELRVHRSD 378

Query: 174 ILNC-WRC 154
            +N  W C
Sbjct: 379 AMNLRWFC 386


>11_03_0026 -
           9057965-9058234,9059410-9059522,9059612-9059802,
           9060606-9060720,9061781-9061907,9062915-9062990,
           9064247-9064365,9065430-9065593,9065666-9065779,
           9065966-9066065,9066276-9066340,9068175-9068253,
           9069513-9069659,9069904-9070161,9070657-9070852,
           9071179-9071402,9072531-9072554
          Length = 793

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 337 HARFGNEHCVWVQIQRVALLCHA 269
           H  FG++H + VQ+Q  A++CHA
Sbjct: 203 HIVFGSQHNLPVQLQAKAVICHA 225


>01_06_1510 - 37859664-37861319
          Length = 551

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 301 APTHSAHYQIWRDSTDNEVQIALRHRITRMA 393
           AP H  H+Q++R S      +ALRHR  R A
Sbjct: 24  APAHG-HHQVFRCSAAKPSPLALRHRAGRPA 53


>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
            11242381-11242449,11242551-11243480,11243868-11243906,
            11244414-11244478,11244663-11244768,11244850-11245050,
            11247001-11247201,11247756-11247779,11249425-11249586,
            11249676-11249915,11250267-11250479,11250618-11250968,
            11251041-11251193,11251649-11251858,11252049-11252267,
            11252365-11252482,11252879-11253828,11254023-11254220,
            11254294-11254553,11255316-11255505,11255817-11256169,
            11258278-11258386,11258466-11258615,11258748-11258844,
            11259315-11259415
          Length = 2065

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 165  SLKY--VNCERAIRVHVDGKYKSTFEHADQIQTMLQ 266
            +LKY  V+C+R  R+H+D K     E  D +   LQ
Sbjct: 1514 ALKYPCVSCQRLSRLHLDYKMLKNVEVLDNLYVFLQ 1549


>11_01_0640 - 5142578-5142628,5142780-5143139,5144180-5144356
          Length = 195

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +1

Query: 187 NGQYVSTSTASTNRRLSMPTKSRPCSR*RGKAGRPAVFAPTHSAH 321
           +G     +T ST    +  T  R   R RG+ G+PA      S H
Sbjct: 15  SGAIAKAATTSTGTARAATTAGRGRGRGRGRGGKPATAISPPSTH 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,157,904
Number of Sequences: 37544
Number of extensions: 344258
Number of successful extensions: 979
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)