Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120230X.Seq
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12932| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 31 0.74
SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_38437| Best HMM Match : VWA (HMM E-Value=0) 29 3.0
SB_35244| Best HMM Match : Ldl_recept_b (HMM E-Value=3.2e-11) 29 3.0
SB_25136| Best HMM Match : Thiolase_N (HMM E-Value=4.4e-09) 29 3.0
SB_55061| Best HMM Match : Defensin_beta (HMM E-Value=6.9) 29 3.0
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 3.0
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18) 28 5.3
SB_10868| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16) 27 6.9
SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4) 27 9.2
SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_4285| Best HMM Match : DUF735 (HMM E-Value=2.4) 27 9.2
>SB_12932| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 577
Score = 30.7 bits (66), Expect = 0.74
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 303 CKYSGSPCFATLSGAWSGFGRHAQ 232
CKY P + SGAW+ F RH Q
Sbjct: 6 CKYVRIPGYIAASGAWTSFPRHNQ 29
>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1338
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = -1
Query: 312 VCGC-KYSGSPCFATLSGAWSGFGRHAQTSICTCRRRGHVL 193
VCGC G W FG A+ C R+RG VL
Sbjct: 1011 VCGCCDVCAKTVTQKCGGYWGQFGTCAEGLSCVLRKRGQVL 1051
>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
Length = 3445
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 398 EEVIPQVLCTGKYAPAVEMDTSDVIARIDDLPQKLTVPT 514
+E +P V T +YAP D+ I+D+P + +P+
Sbjct: 293 DEEVPTVKITAEYAPTPASRIPDIQKDINDIPPEHKIPS 331
>SB_35244| Best HMM Match : Ldl_recept_b (HMM E-Value=3.2e-11)
Length = 534
Score = 28.7 bits (61), Expect = 3.0
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Frame = -1
Query: 330 DLVMSTVCGCKYSGSPCFATLSGAW-----SGFGRHAQTSICTCRRRGHVLPVHNLHILN 166
+L +ST+C ++SGS LS W G A ++I CR G V NL
Sbjct: 332 NLALSTICLSRHSGSVDILALSTFWLCRHFGSVGILALSTIWLCRHSG---SVDNLDQST 388
Query: 165 CWRC 154
W C
Sbjct: 389 FWLC 392
>SB_25136| Best HMM Match : Thiolase_N (HMM E-Value=4.4e-09)
Length = 162
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 167 TAGDVLGHKSDWLLVAEHVSERELVLAEFELPDFNLSH 54
+ G+V+GH +D L A HVS +E E+ L L+H
Sbjct: 8 STGEVMGHSADRLASAFHVSRQE--QDEYALRSHTLAH 43
>SB_55061| Best HMM Match : Defensin_beta (HMM E-Value=6.9)
Length = 350
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +2
Query: 203 PRRRQVQIDV*ACRPNPDHA---PDSVAKQGDPLYLHP 307
P R V I + C PNPD+ PDS D Y +P
Sbjct: 10 PSRSTVSISLIYCNPNPDYCYPNPDSCYPNPDSCYPNP 47
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 206 RRRQVQIDV*ACRPNPDHAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSK 361
RRR +Q D+ R P+ P A G P ++ PH G L +K K
Sbjct: 536 RRRHLQNDILNGRKVPEEKPSETATNGPP-FICPHANCGRSFGARHLYLKHK 586
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -1
Query: 309 CGCKYSGSPCFATLSGAWSGFGRHAQTSICTCRRRGHVLPVHNLHILNCWRCPW 148
C C Y G+ +S + R A+ +CT R +L +N + NC RC +
Sbjct: 175 CVCVYGGTG----ISEQIAELKRGAEIIVCTPGRMIDMLTANNGRVTNCQRCTY 224
>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
Length = 593
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -2
Query: 245 VGMLKRRFVLAVDVDTYCPFTIYIF*TAGDVLGHKSDWLLVAEHVSER 102
+ M + ++ +V VD Y P Y+ A V K +W+ V E+ E+
Sbjct: 419 IDMNELYYICSVRVDGYTPLDQYVKTFAISVSNDKQNWIYVLENGKEK 466
>SB_10868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 42
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 294 SGSPCFATLSGAWS 253
SGSPCF L G WS
Sbjct: 26 SGSPCFLNLHGVWS 39
>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
Length = 1222
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 186 ERAIRVHVDGKYKSTFEHADQIQTMLQIAWQ 278
+RAI VHVDG Y + + +L++ Q
Sbjct: 1059 QRAIEVHVDGSYDRAEQQVKDVMDVLKVQEQ 1089
>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 829
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -3
Query: 340 NHARFGNEHCVWVQIQRVALLCHAIWSMVWI 248
NH + H +W + +CHA+W ++ I
Sbjct: 3 NHHNYCTRHALW-ETYHSYCICHALWEIIAI 32
>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 834
Score = 27.1 bits (57), Expect = 9.2
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 251 PDHAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSKLPYAIELQEWL-LEEVIP-QVL 421
P + + K P HP TVLI +I L + + L I LQ L L+ +IP QVL
Sbjct: 316 PLYKSSPLYKSSPPTSTHPSTVLIPLQVLIPLQVLTPLQVLIPLQVLLPLQVLIPLQVL 374
>SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1931
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 371 AIELQEWLLEEVIPQVLCTGK 433
AI + +W L+ VIP+ LCT K
Sbjct: 420 AIPVDQWNLDYVIPKPLCTTK 440
>SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)
Length = 1633
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 280 AGRPAVFAPTHSAHYQIWRDSTDNEVQIALRHRITRMAFGGGHSSSAMH 426
A + +VF P+ S+H + W D + ++ I + R++R SS + H
Sbjct: 1557 ANKKSVFRPSPSSHTKNWADFSPSD-NITKKARLSRRKRSEAFSSESDH 1604
>SB_13740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 225 STFEHADQIQTMLQIAWQSRATRCICTHT 311
+T HAD +QT +Q Q+R R C+HT
Sbjct: 303 ATVTHADTLQTRMQSRMQTR-YRHACSHT 330
>SB_4285| Best HMM Match : DUF735 (HMM E-Value=2.4)
Length = 267
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/72 (22%), Positives = 32/72 (44%)
Frame = +3
Query: 87 GQDEFTLRYVLGDEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQTMLQ 266
G D LR++ G Q ++ V K S+ K + + I + + E D+I +M
Sbjct: 29 GLDPAVLRHIDGQYQLLKEVQKKAESTKKKIGDQLTIEIREALDNAQSVEEVDEIVSMSL 88
Query: 267 IAWQSRATRCIC 302
+ + ++ +C
Sbjct: 89 LHFNIALSKSVC 100
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,322,724
Number of Sequences: 59808
Number of extensions: 395694
Number of successful extensions: 1046
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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