Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120230X.Seq
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical pr...    30   0.85 
Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr...    29   2.6  
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro...    29   2.6  
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    27   6.0  

>Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical
           protein ZK632.5 protein.
          Length = 824

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +3

Query: 138 RFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQTML-QIAWQ---SRATRCICT 305
           R   +D  +SLK V+  + + V +DG+YK        ++  + Q+AW    +  TR +  
Sbjct: 93  RLSDEDFENSLKEVSLSQKLMVRIDGEYKYRLYSKPIVRNNIPQLAWDISPALRTRKVAE 152

Query: 306 HTQCSLPN 329
             + S PN
Sbjct: 153 KDEISPPN 160


>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical protein
            C25D7.3 protein.
          Length = 2150

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +2

Query: 365  PYAIELQEWLLEEVIPQVLCTGKYAPAVEMDTSDVIARIDDLPQKLTVP 511
            P  +E QE +  EV P+V+     APA +++T  +  +I++ P K+  P
Sbjct: 1356 PEVVEEQEQVEPEVGPEVVHEPVPAPAAQLETEPIEQQIEE-PDKVFEP 1403


>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger protein
            protein.
          Length = 2150

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +2

Query: 365  PYAIELQEWLLEEVIPQVLCTGKYAPAVEMDTSDVIARIDDLPQKLTVP 511
            P  +E QE +  EV P+V+     APA +++T  +  +I++ P K+  P
Sbjct: 1356 PEVVEEQEQVEPEVGPEVVHEPVPAPAAQLETEPIEQQIEE-PDKVFEP 1403


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
            protein H02F09.3 protein.
          Length = 1275

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
 Frame = -1

Query: 510  GTVNFCGRSSIL-AITSLVSISTAGAYLPVHST*GMTSSKSHSCNS---MA*GNLDFIIS 343
            G+    G S+IL +  S VS+ST G+ +   ST   +S  + S ++   ++ G+   I S
Sbjct: 1134 GSTGSTGESTILESSVSTVSVST-GSTITDGSTASRSSVSTVSASTESTVSGGSSASIGS 1192

Query: 342  *ITPDLVMSTVCGCKYSGS 286
              TPD   ST+ G   SGS
Sbjct: 1193 TNTPDSTESTISGSTISGS 1211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,587,426
Number of Sequences: 27780
Number of extensions: 284509
Number of successful extensions: 774
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)