Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120229.Seq
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    90   3e-19
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    26   6.6  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 90.2 bits (214), Expect = 3e-19
 Identities = 38/76 (50%), Positives = 51/76 (67%)
 Frame = +2

Query: 503 YRASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLICYIRHLNNHFSKNHHFGFEAAA*Y 682
           + A FTI+D +YG++F+ ATG HGIH+I+GT+ LL+        H +  HH GFE    Y
Sbjct: 194 WNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLVATYNIYTYHLTNTHHNGFECGIYY 253

Query: 683 *HFVDVV*LFLYISIY 730
            HF DVV LFLY++IY
Sbjct: 254 WHFCDVVWLFLYLTIY 269



 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
 Frame = +3

Query: 276 LSPNIEIGRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRL 449
           LSP  E+G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L
Sbjct: 116 LSPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGL 175

Query: 450 FLTILLGFYF 479
           ++TI L F F
Sbjct: 176 YMTIALSFLF 185



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 136 RDISREGTYQGKHTILVNKGLR*G 207
           RD+S E    G HT  V KGL+ G
Sbjct: 69  RDMSTEANIHGAHTKAVTKGLKIG 92


>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 566 FHGIHVIIGTLFLLICYIRHLNNHFSKNHHFGFEAAA*Y*HF 691
           +  I +  G +++   YIR + +H   + HF  EA A + HF
Sbjct: 130 YGNIKIFSGKIYIASQYIRTIKDHNEVHFHF-LEAIAVHLHF 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,302
Number of Sequences: 5004
Number of extensions: 34712
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)