Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120227.Seq
(564 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 158 7e-38
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 149 6e-35
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 148 8e-35
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 126 3e-28
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 125 6e-28
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 113 3e-24
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 105 5e-22
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 103 2e-21
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 102 5e-21
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 97 3e-19
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 87 3e-16
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 72 8e-12
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 55 1e-06
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 52 1e-05
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 50 4e-05
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 44 0.002
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 44 0.002
UniRef50_A6WAT7 Cluster: Putative uncharacterized protein; n=1; ... 39 0.070
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 39 0.093
UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1; ... 39 0.093
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 39 0.093
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 38 0.16
UniRef50_Q8BY81 Cluster: 3 days neonate thymus cDNA, RIKEN full-... 38 0.21
UniRef50_UPI00006614B8 Cluster: Homolog of Homo sapiens "Keratin... 37 0.28
UniRef50_Q2F895 Cluster: Virion core protein; n=4; Orf virus|Rep... 37 0.28
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 37 0.37
UniRef50_UPI0000E814A8 Cluster: PREDICTED: similar to MEGF6; n=1... 36 0.65
UniRef50_Q9KI83 Cluster: VrrB; n=9; Bacillus cereus group|Rep: V... 36 0.65
UniRef50_A7CME0 Cluster: Putative uncharacterized protein precur... 35 1.5
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 34 2.0
UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1; ... 34 2.6
UniRef50_Q5QMN1 Cluster: Putative uncharacterized protein P0419B... 33 3.5
UniRef50_Q2VZ09 Cluster: Predicted SAM-dependent methyltransfera... 33 4.6
UniRef50_Q9KI91 Cluster: VrrB; n=17; Bacteria|Rep: VrrB - Bacill... 33 4.6
UniRef50_A5WHY9 Cluster: TonB-dependent receptor; n=1; Psychroba... 33 4.6
UniRef50_Q0J1G4 Cluster: Os09g0441900 protein; n=2; Oryza sativa... 33 4.6
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 33 4.6
UniRef50_Q9M7I5 Cluster: Arabinogalactan protein; n=1; Zea mays|... 33 6.1
UniRef50_Q8SZT1 Cluster: GH27708p; n=18; Eumetazoa|Rep: GH27708p... 33 6.1
UniRef50_A7TPB7 Cluster: Putative uncharacterized protein; n=1; ... 33 6.1
UniRef50_A4Y015 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 32 8.1
UniRef50_Q4QE35 Cluster: Putative uncharacterized protein; n=3; ... 32 8.1
UniRef50_A7ATI1 Cluster: Putative uncharacterized protein; n=1; ... 32 8.1
UniRef50_Q4P632 Cluster: Putative uncharacterized protein; n=1; ... 32 8.1
UniRef50_Q64298 Cluster: Sperm mitochondrial-associated cysteine... 32 8.1
UniRef50_P83183 Cluster: Cysteine-rich protamine; n=1; Eledone c... 32 8.1
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 158 bits (384), Expect = 7e-38
Identities = 71/84 (84%), Positives = 79/84 (94%)
Frame = +1
Query: 256 ESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAY 435
+SGNLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFIIGKG K Y
Sbjct: 176 DSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPY 235
Query: 436 ISLPRGKGIRLTIAEERDKRIAAK 507
ISLP+GKG++L+IAEERDKR+AAK
Sbjct: 236 ISLPKGKGVKLSIAEERDKRLAAK 259
Score = 140 bits (338), Expect = 3e-32
Identities = 62/88 (70%), Positives = 72/88 (81%)
Frame = +2
Query: 2 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 181
++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRTIRYP
Sbjct: 91 TLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYP 150
Query: 182 DPLIKVNDSIQLDIATTKIMDFIKLSRG 265
DPLI NDS+Q+DIA+ KI D+IK G
Sbjct: 151 DPLIHANDSVQVDIASGKITDYIKFDSG 178
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 149 bits (360), Expect = 6e-35
Identities = 63/84 (75%), Positives = 78/84 (92%)
Frame = +1
Query: 256 ESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAY 435
++GNLCM+TGG NLGR+G I +RERHPGSFD+VH+KD+ G++FATRL+N+F+IGKG K +
Sbjct: 176 DTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPW 235
Query: 436 ISLPRGKGIRLTIAEERDKRIAAK 507
ISLPRGKGIRLTIAEERDKR+AAK
Sbjct: 236 ISLPRGKGIRLTIAEERDKRLAAK 259
Score = 143 bits (346), Expect = 3e-33
Identities = 63/88 (71%), Positives = 73/88 (82%)
Frame = +2
Query: 2 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 181
SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTHD RTIRYP
Sbjct: 91 SIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYP 150
Query: 182 DPLIKVNDSIQLDIATTKIMDFIKLSRG 265
DPLIKVND+IQ+D+ T KI DFIK G
Sbjct: 151 DPLIKVNDTIQIDLETGKITDFIKFDTG 178
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 148 bits (359), Expect = 8e-35
Identities = 62/84 (73%), Positives = 78/84 (92%)
Frame = +1
Query: 256 ESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAY 435
++ N+CM+TGG NLGR+G I +RERHPGSFD+VH+KDSTG++FATRL+N+F+IGKG K +
Sbjct: 208 DTSNMCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKPW 267
Query: 436 ISLPRGKGIRLTIAEERDKRIAAK 507
+SLPRGKGIRLTIAEERDKR+AAK
Sbjct: 268 VSLPRGKGIRLTIAEERDKRLAAK 291
Score = 89.4 bits (212), Expect(2) = 2e-27
Identities = 37/55 (67%), Positives = 47/55 (85%)
Frame = +2
Query: 89 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIK 253
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIK
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIK 206
Score = 55.6 bits (128), Expect(2) = 2e-27
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +2
Query: 2 SIEKTNELFRLIYDVKGRFTIHRITPEEAK 91
SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 91 SIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 126 bits (305), Expect = 3e-28
Identities = 52/79 (65%), Positives = 68/79 (86%)
Frame = +1
Query: 256 ESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAY 435
++GNLCM+TGG NLGR+G I +RE HPGSFD+VH+KD+ G++FATRL+N+F+IGKG +
Sbjct: 148 DTGNLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNIPW 207
Query: 436 ISLPRGKGIRLTIAEERDK 492
ISLP GKGIR TIAEE+ +
Sbjct: 208 ISLPHGKGIRFTIAEEKKR 226
Score = 116 bits (279), Expect = 4e-25
Identities = 50/75 (66%), Positives = 60/75 (80%)
Frame = +2
Query: 41 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 220
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 221 IATTKIMDFIKLSRG 265
+ T KI DF K G
Sbjct: 136 LETGKITDFFKFDTG 150
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 125 bits (302), Expect = 6e-28
Identities = 57/91 (62%), Positives = 69/91 (75%)
Frame = +2
Query: 2 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 181
SI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYP
Sbjct: 91 SIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYP 150
Query: 182 DPLIKVNDSIQLDIATTKIMDFIKLSRGTCV 274
DPLIK ND+I+LD+ KI++FIK G V
Sbjct: 151 DPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 124 bits (298), Expect = 2e-27
Identities = 54/82 (65%), Positives = 69/82 (84%)
Frame = +1
Query: 262 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYIS 441
GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++S
Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVS 237
Query: 442 LPRGKGIRLTIAEERDKRIAAK 507
LP+GKGI+LTI EE KR+A++
Sbjct: 238 LPKGKGIKLTIIEEARKRLASQ 259
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 113 bits (272), Expect = 3e-24
Identities = 53/92 (57%), Positives = 70/92 (76%), Gaps = 1/92 (1%)
Frame = +2
Query: 2 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 181
SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGRTIR+P
Sbjct: 91 SIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGRTIRFP 150
Query: 182 DPLIKVNDSIQLDIATTKIMDFIKLSRGT-CV 274
+ LIK NDSI LD+ K++DFIK S G+ CV
Sbjct: 151 NLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCV 182
Score = 77.0 bits (181), Expect = 3e-13
Identities = 36/77 (46%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Frame = +1
Query: 262 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYIS 441
G+LC++ G N+GR+G ++ GS IV +KD G +F+T+ N+F+IGKGTK++IS
Sbjct: 178 GSLCVVIKGSNIGRIGVFINTIGGQGSDSIVCLKDFNGSSFSTQTKNLFVIGKGTKSFIS 237
Query: 442 LPRGKGIR-LTIAEERD 489
LPR +G+R LT + E D
Sbjct: 238 LPRFRGLRTLTKSLEHD 254
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 105 bits (253), Expect = 5e-22
Identities = 45/87 (51%), Positives = 62/87 (71%)
Frame = +2
Query: 5 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 184
IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD RTIR+P+
Sbjct: 204 IEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPN 263
Query: 185 PLIKVNDSIQLDIATTKIMDFIKLSRG 265
P IK+ D+++ D+ KI +F L G
Sbjct: 264 PEIKIGDTLKYDLVNNKIENFAHLESG 290
Score = 105 bits (253), Expect = 5e-22
Identities = 45/83 (54%), Positives = 62/83 (74%)
Frame = +1
Query: 253 VESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKA 432
+ESGN+C I G N+GRVG I E+H GSFDI H+KD+ G+ FATRL N+F++G+G K+
Sbjct: 287 LESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKS 346
Query: 433 YISLPRGKGIRLTIAEERDKRIA 501
+I LP G G+R TI EER ++ +
Sbjct: 347 WIELPSGDGVRETILEERKRKFS 369
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 103 bits (248), Expect = 2e-21
Identities = 45/88 (51%), Positives = 65/88 (73%)
Frame = +2
Query: 2 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 181
SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDGRTIRYP
Sbjct: 91 SIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTIRYP 150
Query: 182 DPLIKVNDSIQLDIATTKIMDFIKLSRG 265
P ++ ND+I+L++ T KI+DF+K G
Sbjct: 151 HPELQANDTIKLNLETGKIVDFVKFDIG 178
Score = 103 bits (246), Expect = 4e-21
Identities = 45/79 (56%), Positives = 60/79 (75%)
Frame = +1
Query: 262 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYIS 441
GN M+ GG +GRVG IV RE HPGSF+IVHIKD+ G+TF TRLNNVF+IGKGT+ ++
Sbjct: 178 GNTAMMIGGNGMGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTRLNNVFVIGKGTETLVN 237
Query: 442 LPRGKGIRLTIAEERDKRI 498
LP KGI+ + ++ ++ I
Sbjct: 238 LPLDKGIKKPLLQQVNETI 256
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 102 bits (245), Expect = 5e-21
Identities = 49/100 (49%), Positives = 64/100 (64%)
Frame = +2
Query: 2 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 181
SI+K E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV HD T+R+P
Sbjct: 101 SIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVIHDIHTVRHP 160
Query: 182 DPLIKVNDSIQLDIATTKIMDFIKLSRGTCV*SREAVTWG 301
D LIKVND+IQ+D+ T KI +K G WG
Sbjct: 161 DSLIKVNDTIQIDLETGKI-TALKFDTGNLCLVTGGGNWG 199
Score = 77.8 bits (183), Expect = 2e-13
Identities = 33/64 (51%), Positives = 47/64 (73%)
Frame = +1
Query: 256 ESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAY 435
++GNLC++TGG N GR+G I +RERHP SFD H+KD+ ++F+ +F+I KG K +
Sbjct: 185 DTGNLCLVTGGGNWGRIGVITNRERHPVSFDTFHVKDANSNSFSI----IFVIDKGNKPW 240
Query: 436 ISLP 447
ISLP
Sbjct: 241 ISLP 244
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 96.7 bits (230), Expect = 3e-19
Identities = 41/85 (48%), Positives = 60/85 (70%)
Frame = +2
Query: 11 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 190
K+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTHDGRTI Y DP
Sbjct: 108 KSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDPS 167
Query: 191 IKVNDSIQLDIATTKIMDFIKLSRG 265
++V+D+++ +I T ++ IK G
Sbjct: 168 VRVHDALKFNIKTGEVESVIKFKVG 192
Score = 83.0 bits (196), Expect = 4e-15
Identities = 38/73 (52%), Positives = 52/73 (71%)
Frame = +1
Query: 262 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYIS 441
G++ M+T G N+GRVGTI E+ SFDIVH+KD++G FATR+ NVF+IG+ IS
Sbjct: 192 GDVAMVTAGGNVGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRIMNVFVIGENEHPLIS 251
Query: 442 LPRGKGIRLTIAE 480
LP +G+R +I E
Sbjct: 252 LPAREGVRPSILE 264
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 87.0 bits (206), Expect = 3e-16
Identities = 37/86 (43%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Frame = +1
Query: 262 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG-TKAYI 438
G ++TGG N GR+G IV E HPG+F+I H+KD++G FATR N+F+IGK +
Sbjct: 175 GKAVIVTGGANRGRIGEIVKVECHPGAFNIAHLKDASGAEFATRAANIFVIGKDLNNLQV 234
Query: 439 SLPRGKGIRLTIAEERDKRIAAKAPR 516
++P+ +G+R+ + +ER++R+ A R
Sbjct: 235 TVPKQQGLRMNVIQEREERLIAAEAR 260
Score = 84.6 bits (200), Expect = 1e-15
Identities = 41/90 (45%), Positives = 54/90 (60%)
Frame = +2
Query: 5 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 184
I KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTHDG IRYPD
Sbjct: 89 IPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHRIRYPD 148
Query: 185 PLIKVNDSIQLDIATTKIMDFIKLSRGTCV 274
P + D+I ++ K +D IK +G V
Sbjct: 149 PHTSIGDTIVYNVKEKKCVDLIKNRQGKAV 178
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 72.1 bits (169), Expect = 8e-12
Identities = 34/83 (40%), Positives = 57/83 (68%)
Frame = +2
Query: 2 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 181
SIEKT E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G +IR+
Sbjct: 91 SIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGLSIRFC 149
Query: 182 DPLIKVNDSIQLDIATTKIMDFI 250
DP I + +I++ T+K++++I
Sbjct: 150 DPAIDLGYTIKISNETSKVIEYI 172
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 55.2 bits (127), Expect = 1e-06
Identities = 31/87 (35%), Positives = 43/87 (49%)
Frame = +2
Query: 5 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 184
IE E +R++Y+ +G + + T E A KL KV+ P N L THDGRT D
Sbjct: 86 IEINGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDD 145
Query: 185 PLIKVNDSIQLDIATTKIMDFIKLSRG 265
KV D + + KI + IK+ G
Sbjct: 146 KSKKVGDVWAVSVPDMKISEIIKMQPG 172
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 51.6 bits (118), Expect = 1e-05
Identities = 29/90 (32%), Positives = 46/90 (51%)
Frame = +2
Query: 5 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD 184
I KT E++R++ D KGR +++I EE KLCK+ +T + HDG+ + +
Sbjct: 93 IPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDE 150
Query: 185 PLIKVNDSIQLDIATTKIMDFIKLSRGTCV 274
V D I L + +I + +L G CV
Sbjct: 151 NDYNVGDVIDLKVPDHEINEVFELKEGACV 180
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 50.0 bits (114), Expect = 4e-05
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Frame = +1
Query: 262 GNLCMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYI 438
G + +I GGRN+GRVG + S ++ G +V ++D++G+ F T L+ VF+IG + I
Sbjct: 187 GAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIGL-DRPVI 245
Query: 439 SLPRG 453
SLP G
Sbjct: 246 SLPEG 250
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 44.4 bits (100), Expect = 0.002
Identities = 25/59 (42%), Positives = 32/59 (54%)
Frame = -1
Query: 444 QRDVRLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQ 268
+RD RL A D EHV + R + ++ GVL VHN EG + LA D V + DH Q
Sbjct: 43 KRDHRLVARTDGEHVRRARRKLLTGGVLQVHNFEGTDVLLAALDHPDATGVVTTGDHAQ 101
Score = 38.7 bits (86), Expect = 0.093
Identities = 25/88 (28%), Positives = 45/88 (51%)
Frame = -3
Query: 268 SSPTQLDEVHNLRSCNV*LDGIVDFDKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVL 89
S+ +LD + +L +V +G+ D + + +GAA+++ R+ L QLVL
Sbjct: 102 SADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVL 161
Query: 88 SLLRGDTVDCESALNIID*TKQFISLLN 5
D V ES+L ++D + FI+L +
Sbjct: 162 RFDSLDAVHNESSLGVVDEPEVFIALFD 189
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 44.0 bits (99), Expect = 0.002
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +2
Query: 2 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 181
S N+ +R++ G+ T++ I E K+CKV ++ ++T D R ++
Sbjct: 91 SFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKIN 150
Query: 182 DPLIKVNDSIQLDIATTKIMDFIKLSRGT-CV*SR 283
IKV DS+ + +I+ +K G+ C+ +R
Sbjct: 151 YAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITR 185
Score = 38.3 bits (85), Expect = 0.12
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +1
Query: 256 ESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAY 435
E G+LC+IT G++LG + I + ++H++ G + +++ +IG+ +
Sbjct: 176 EVGSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHLEKIDGKKLTKKCSDLLVIGESKTSI 235
Query: 436 ISL 444
+SL
Sbjct: 236 LSL 238
>UniRef50_A6WAT7 Cluster: Putative uncharacterized protein; n=1;
Kineococcus radiotolerans SRS30216|Rep: Putative
uncharacterized protein - Kineococcus radiotolerans
SRS30216
Length = 189
Score = 39.1 bits (87), Expect = 0.070
Identities = 26/74 (35%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Frame = -3
Query: 523 PYCAAPWLRCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSW-RRCVPWSP*CAQC 347
P C A RC P R CP R ARC CP R RC RC P
Sbjct: 5 PCCFA---RCPARCPARCPARCPARCPARCPARCPARCPARCPARCPARCPAHCPNNGAA 61
Query: 346 RRSRDVSRGTRWCP 305
RR R + R P
Sbjct: 62 RRWRPAAAARRARP 75
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 38.7 bits (86), Expect = 0.093
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRTIRY 178
SI+ + ++YD KG+ I + P KL K VK+ G + L HDG+TI
Sbjct: 88 SIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGKTIVT 146
Query: 179 PDPLIKVNDSIQLDIATTKIMDFIKLSRG 265
I +D + + I +I + +K++ G
Sbjct: 147 DRKDINTSDVLLMKIPDLEIENVLKIAEG 175
>UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 186
Score = 38.7 bits (86), Expect = 0.093
Identities = 24/84 (28%), Positives = 41/84 (48%)
Frame = -1
Query: 507 LGCDALVPXXXXXXXXXXXARQRDVRLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMS 328
LGC L+ R+R RL LA+ EH+ Q + + G+L+V ++G +
Sbjct: 88 LGCKPLLGLFDDRQLDXLTLRKRYPRLCPLANDEHIAQTSCKFMPSGILNVDGLKGPLVL 147
Query: 327 LAGHDGAHTPQVTASRDHTQVPRL 256
L D ++T V ++ H +P +
Sbjct: 148 LPVLDDSNTAPVPSTSHHDNIPNI 171
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 38.7 bits (86), Expect = 0.093
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 262 GNLCMITGGRNLGRVGTIVSRERHPGSF--DIVHIKDSTGHTFATRLNNVFIIGKGTKA 432
GN+ MI GG++ G+VG IV R S ++ DS G F T VF++G+ A
Sbjct: 177 GNVAMIVGGKHSGKVGRIVEIIRTASSVPNHVILTDDSAGERFETIEEYVFMVGRSAIA 235
Score = 35.1 bits (77), Expect = 1.1
Identities = 23/76 (30%), Positives = 33/76 (43%)
Frame = +2
Query: 2 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 181
SI K + +R+ DVKG I E AK +LCK++ T L G +
Sbjct: 86 SIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGANV-LA 144
Query: 182 DPLIKVNDSIQLDIAT 229
D K DS+ + + T
Sbjct: 145 DNTYKAKDSVVVTLGT 160
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 37.9 bits (84), Expect = 0.16
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +1
Query: 262 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 420
G L ITGG+++G IV E DIV +++ G F T VFI+G+
Sbjct: 185 GKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ 237
>UniRef50_Q8BY81 Cluster: 3 days neonate thymus cDNA, RIKEN
full-length enriched library, clone:A630024D08
product:hypothetical Histidine-rich region containing
protein, full insert sequence; n=1; Mus musculus|Rep: 3
days neonate thymus cDNA, RIKEN full-length enriched
library, clone:A630024D08 product:hypothetical
Histidine-rich region containing protein, full insert
sequence - Mus musculus (Mouse)
Length = 139
Score = 37.5 bits (83), Expect = 0.21
Identities = 24/58 (41%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 303 CGHHRVPRETSR-LLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 473
C HH R LLR + G H RH +R H RQ EGV R+GHP HH
Sbjct: 55 CAHHLSADPAERVLLRGVSPPGEALGHQRHY--ERQHVRQHVEGVGQHGERRGHPAHH 110
>UniRef50_UPI00006614B8 Cluster: Homolog of Homo sapiens
"Keratin-associated protein 10-4; n=1; Takifugu
rubripes|Rep: Homolog of Homo sapiens
"Keratin-associated protein 10-4 - Takifugu rubripes
Length = 353
Score = 37.1 bits (82), Expect = 0.28
Identities = 27/71 (38%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Frame = -3
Query: 535 YCP*P-YCAAP---WLR--CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRCV 374
YC P YC P W C CP R C C + RC SC C RC TS RC
Sbjct: 130 YCRCPTYCWCPTSCWCPTYCWCPTYCRCPTSCWCPTSCRCPTSCWCPTYCRCPTSC-RCP 188
Query: 373 P--WSP*CAQC 347
W P +C
Sbjct: 189 TSCWCPTYCRC 199
Score = 37.1 bits (82), Expect = 0.28
Identities = 27/71 (38%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Frame = -3
Query: 535 YCP*P-YCAAP---WLR--CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRCV 374
YC P YC P W C CP R C C + RC SC C RC TS RC
Sbjct: 256 YCRCPTYCWCPTSCWCPTYCWCPTYCRCPTSCWCPTSCRCPTSCWCPTYCRCPTSC-RCP 314
Query: 373 P--WSP*CAQC 347
W P +C
Sbjct: 315 TSCWCPTYCRC 325
Score = 35.5 bits (78), Expect = 0.86
Identities = 27/83 (32%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Frame = -3
Query: 535 YCP*PYCAAP---WL--RCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCST-SWRRCV 374
+CP YC P W C CP C C + RC SC C RC T W
Sbjct: 276 WCP-TYCRCPTSCWCPTSCRCPTSCWCPTYCRCPTSCRCPTSCWCPTYCRCPTYCWCPTS 334
Query: 373 PWSP*CAQCRRSRDVSRGTRWCP 305
W P C S WCP
Sbjct: 335 CWCPTYCWCPTS-------CWCP 350
Score = 35.1 bits (77), Expect = 1.1
Identities = 22/63 (34%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Frame = -3
Query: 532 CP*PYCAAPWLRCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTS-WRRCVPWSP*C 356
CP C P C CP R C C RC C C RC TS W W P
Sbjct: 169 CP-TSCWCPTY-CRCPTSCRCPTSCWCPTYCRCPTYCRCPTSCRCPTSCWCPTYCWCPTS 226
Query: 355 AQC 347
C
Sbjct: 227 CWC 229
Score = 35.1 bits (77), Expect = 1.1
Identities = 26/79 (32%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Frame = -3
Query: 535 YCP*PY-CAAPWLRCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTS-WRRCVPWSP 362
YC P C P C CP R C C + RC SC C C TS W W P
Sbjct: 178 YCRCPTSCRCP-TSCWCPTYCRCPTYCRCPTSCRCPTSCWCPTYCWCPTSCWCPTYCWCP 236
Query: 361 *CAQCRRSRDVSRGTRWCP 305
C WCP
Sbjct: 237 TYCWCPTYCRCPTSC-WCP 254
Score = 34.3 bits (75), Expect = 2.0
Identities = 28/84 (33%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Frame = -3
Query: 535 YCP*PYCAAPWLRCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTS-W----RRCVP 371
+CP YC P C CP R C C + C C C RC TS W RC
Sbjct: 240 WCP-TYCRCP-TSCWCPTYCRCPTYCWCPTSCWCPTYCWCPTYCRCPTSCWCPTSCRCPT 297
Query: 370 --WSP*CAQCRRSRDVSRGTRWCP 305
W P +C S WCP
Sbjct: 298 SCWCPTYCRCPTSCRCPTSC-WCP 320
Score = 33.9 bits (74), Expect = 2.6
Identities = 32/101 (31%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
Frame = -3
Query: 535 YCP*PYCAAPWLRCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRCVPWSP*C 356
+CP YC P C CP R C C C SC C C TS C W P
Sbjct: 18 WCP-TYCWCPTY-CRCPTSCRCPTSCWCPTYCWCPTSCWCPTYCWCPTS---C--WCPTS 70
Query: 355 AQCRRSRDVSRGTR-----WCPHA---PSYGLP*SYTSSPT 257
+C S R WCP + P+Y +Y PT
Sbjct: 71 CRCPTSCWCPTYCRCPTYCWCPTSCWCPTYCWCPTYCRCPT 111
Score = 33.9 bits (74), Expect = 2.6
Identities = 28/84 (33%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Frame = -3
Query: 535 YCP*P-YCAAP---WLR--CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCST-SWRRC 377
YC P YC P W C CP R C C RC SC C RC T W
Sbjct: 82 YCRCPTYCWCPTSCWCPTYCWCPTYCRCPTYCWCPTYCRCPTSCWCPTYCRCPTYCWCPT 141
Query: 376 VPWSP*CAQCRRSRDVSRGTRWCP 305
W P C WCP
Sbjct: 142 SCWCPTYCWCPTYCRCPTSC-WCP 164
Score = 33.5 bits (73), Expect = 3.5
Identities = 25/78 (32%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
Frame = -3
Query: 535 YCP*PYCAAPWLRCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCST-SWRRCVPWSP* 359
+CP YC P C CP C C RC SC C RC T W W P
Sbjct: 216 WCP-TYCWCP-TSCWCPTYCWCPTYCWCPTYCRCPTSCWCPTYCRCPTYCWCPTSCWCPT 273
Query: 358 CAQCRRSRDVSRGTRWCP 305
C WCP
Sbjct: 274 YCWCPTYCRCPTSC-WCP 290
>UniRef50_Q2F895 Cluster: Virion core protein; n=4; Orf virus|Rep:
Virion core protein - Orf virus
Length = 334
Score = 37.1 bits (82), Expect = 0.28
Identities = 21/56 (37%), Positives = 22/56 (39%)
Frame = -3
Query: 529 P*PYCAAPWLRCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRCVPWSP 362
P P C AP C PAP CP A C P C C S R+C P P
Sbjct: 159 PAPACPAPAATCPAPAPA---PACPPATAPTCPPPAACPA-PACPPSTRQCPPAPP 210
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 36.7 bits (81), Expect = 0.37
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +2
Query: 26 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD-PLIKVN 202
FR I DV G+ I+ + A KLC+V +T + HDGR I D L
Sbjct: 94 FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGRNILVSDAKLYDSG 153
Query: 203 DSIQLDIATTKIMDFIKLSRG 265
D++ + + + S+G
Sbjct: 154 DTLVISLPDQSVAGHHPFSKG 174
>UniRef50_UPI0000E814A8 Cluster: PREDICTED: similar to MEGF6; n=1;
Gallus gallus|Rep: PREDICTED: similar to MEGF6 - Gallus
gallus
Length = 1119
Score = 35.9 bits (79), Expect = 0.65
Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Frame = -3
Query: 466 GGCP--CRAAARCTPSCPCRL*TRCSTSWRRCVPWSP*CAQ----CRR-SRDVSRGTRWC 308
GGC C C CR R RRC PWSP CAQ C + RDV +G C
Sbjct: 128 GGCEHDCVQLTANQHQCRCRRQYRLREDGRRCAPWSP-CAQRNGGCMQLCRDV-QGAARC 185
Query: 307 PHAPSYGL 284
P Y L
Sbjct: 186 ECRPGYRL 193
>UniRef50_Q9KI83 Cluster: VrrB; n=9; Bacillus cereus group|Rep: VrrB
- Bacillus anthracis
Length = 115
Score = 35.9 bits (79), Expect = 0.65
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +3
Query: 348 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVH----LAAARQGHPPHH 473
H HQG HG H H +Q+VH+ GH +H L QGH HH
Sbjct: 41 HHHHQGHHGHHGHH--QQQVHH-HGHHHIHPQAILYQTHQGHQGHH 83
Score = 34.3 bits (75), Expect = 2.0
Identities = 19/42 (45%), Positives = 20/42 (47%)
Frame = +3
Query: 348 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 473
H HQG HG H H H+ QGH G H QGH HH
Sbjct: 17 HQGHQGHHG-HQGH------HHHQGHHGHHGHHHHQGHHGHH 51
>UniRef50_A7CME0 Cluster: Putative uncharacterized protein
precursor; n=1; Ralstonia pickettii 12D|Rep: Putative
uncharacterized protein precursor - Ralstonia pickettii
12D
Length = 533
Score = 34.7 bits (76), Expect = 1.5
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +3
Query: 282 GRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQ-RVHNRQGHEG-VHLAAARQ 455
G+P + A HRV +E + R H+ + H+ EQ RVH R G EG + A Q
Sbjct: 317 GKPAVQALEAHRVDQERADRRRDAPHRNVQRFHVDARAEQERVHQRDGAEGHEDVFAEEQ 376
Query: 456 GH 461
H
Sbjct: 377 AH 378
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 34.3 bits (75), Expect = 2.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 26 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 172
+R++ D + I PEEA YKL +++R T HDGR +
Sbjct: 102 YRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGRNV 150
>UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Putative
uncharacterized protein - marine gamma proteobacterium
HTCC2143
Length = 110
Score = 33.9 bits (74), Expect = 2.6
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 276 DHGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHE 428
DH R A HR R RL + H+G+ L+H++EQ +G +
Sbjct: 60 DHQRLFKAALARHRKSRRDQRLHKSLRHKGIAQAELQHKIEQDYQETKGQK 110
>UniRef50_Q5QMN1 Cluster: Putative uncharacterized protein
P0419B01.9; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
P0419B01.9 - Oryza sativa subsp. japonica (Rice)
Length = 123
Score = 33.5 bits (73), Expect = 3.5
Identities = 29/67 (43%), Positives = 30/67 (44%), Gaps = 14/67 (20%)
Frame = -3
Query: 457 PC-RAAARCTPSC---PCRL*TR-------CSTSWRRCV-PWSP*CAQ--CRRSRDVSRG 320
PC RAAA C P C PCR R C + CV P SP CA CRR R R
Sbjct: 41 PCVRAAAPCVPPCTSRPCRRPRRHLRPPSACVRAAALCVPPSSPPCASRPCRRPRHRLRP 100
Query: 319 TRWCPHA 299
C HA
Sbjct: 101 PAACVHA 107
>UniRef50_Q2VZ09 Cluster: Predicted SAM-dependent methyltransferase;
n=4; Rhodospirillaceae|Rep: Predicted SAM-dependent
methyltransferase - Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264)
Length = 820
Score = 33.1 bits (72), Expect = 4.6
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +3
Query: 357 HQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 473
H+G TH R + RQGH+ V AA R GHP HH
Sbjct: 24 HRGDQETHDRIGPQLVPGTRQGHQAVDHAAPR-GHPQHH 61
>UniRef50_Q9KI91 Cluster: VrrB; n=17; Bacteria|Rep: VrrB - Bacillus
anthracis
Length = 265
Score = 33.1 bits (72), Expect = 4.6
Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Frame = +3
Query: 348 HCAHQGLHGTHLR--HEVEQRVHNRQGHEGVHLAAARQGHPPHH 473
H H G HG H H H+ QGH G QGH HH
Sbjct: 119 HQGHHGHHGHHHHQGHHGHHGHHHHQGHHGHQGHHHHQGHHGHH 162
Score = 33.1 bits (72), Expect = 4.6
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = +3
Query: 348 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 473
H HQG HG H H + GH+G H GH HH
Sbjct: 128 HHHHQGHHGHHGHHHHQ----GHHGHQGHHHHQGHHGHHGHH 165
>UniRef50_A5WHY9 Cluster: TonB-dependent receptor; n=1;
Psychrobacter sp. PRwf-1|Rep: TonB-dependent receptor -
Psychrobacter sp. PRwf-1
Length = 836
Score = 33.1 bits (72), Expect = 4.6
Identities = 17/53 (32%), Positives = 20/53 (37%)
Frame = +3
Query: 312 HRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPH 470
HR+ R T L H H H H+ E+ H GHE GH H
Sbjct: 314 HRINRLTCGLDEHEHGAHEHHDHEEHDHEEHEHEEHGHEAHEHGHEEHGHQEH 366
>UniRef50_Q0J1G4 Cluster: Os09g0441900 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os09g0441900 protein -
Oryza sativa subsp. japonica (Rice)
Length = 444
Score = 33.1 bits (72), Expect = 4.6
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = -3
Query: 496 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRCVPWSP*CAQCRRS 338
C+CP C A C+ C C T+C + C P C +C+ S
Sbjct: 337 CSCPRCSSCFNIFKCSCAGCCSSLCKCPCTTQCFSCQSSCCKRQPSCCKCQSS 389
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 33.1 bits (72), Expect = 4.6
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Frame = +2
Query: 5 IEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT--IRY 178
I +T + +R++ + R + I+ EEA+ K+C++K + HDG+ +
Sbjct: 96 IPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEI 155
Query: 179 PDP------LIKVNDSIQLDI------ATTKIMDFIKLSRGTCV 274
DP + V DS+ L++ + K++D I G V
Sbjct: 156 EDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWV 199
>UniRef50_Q9M7I5 Cluster: Arabinogalactan protein; n=1; Zea
mays|Rep: Arabinogalactan protein - Zea mays (Maize)
Length = 274
Score = 32.7 bits (71), Expect = 6.1
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Frame = -3
Query: 493 ACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRCVPW--SP*CAQCRRSRDVSRG 320
ACP R PC + A + S P R +TS PW SP CA CR R
Sbjct: 49 ACPGTSRGSRPSPCSSTATSSTSAPGRRPRGTTTSTAWSSPWTASP-CASCREPTPRGRP 107
Query: 319 T--RWCPHAPSYGLP*SYTSSPT 257
R CP +P+ P + +S T
Sbjct: 108 APCRRCP-SPAPARPTACSSRST 129
>UniRef50_Q8SZT1 Cluster: GH27708p; n=18; Eumetazoa|Rep: GH27708p -
Drosophila melanogaster (Fruit fly)
Length = 647
Score = 32.7 bits (71), Expect = 6.1
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 309 HHRVPRETSRLLRHCAH-QGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHP--PHH 473
HH+ ++ + +H H Q H H +H ++Q+ +Q H GHP PHH
Sbjct: 123 HHQQQQQHQQQQQHQQHLQQHHQAHHQHVLQQQQQQQQQHSQHQHQQQHHGHPLHPHH 180
>UniRef50_A7TPB7 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 228
Score = 32.7 bits (71), Expect = 6.1
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +3
Query: 309 HHRV-PRETSRLLRHCAHQGLHGTH-LRHEVEQRVH-NRQGHEGVHLAAARQGHPPHH 473
HH + P + + L H HQ LH TH L H + Q + Q H +H PHH
Sbjct: 95 HHTLQPPQVTVQLHHHIHQHLHHTHQLHHHIHQLLQVIVQHHHPIHQHHHHTHQHPHH 152
>UniRef50_A4Y015 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas mendocina ymp
Length = 783
Score = 32.3 bits (70), Expect = 8.1
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -3
Query: 214 LDGIVDFDKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLR 77
L+ I+ F + + + G + QVR+ILR+GRH L VL + R
Sbjct: 420 LNSILGFAQLLEMDRGTPAQQAQVRHILRAGRHLLGLINEVLDIAR 465
>UniRef50_Q4QE35 Cluster: Putative uncharacterized protein; n=3;
Trypanosomatidae|Rep: Putative uncharacterized protein -
Leishmania major
Length = 723
Score = 32.3 bits (70), Expect = 8.1
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 303 CGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHE 428
CGH+ VP+ S +HC + HG+ Q V HE
Sbjct: 360 CGHNFVPKPLSNSCQHCGERIPHGSRFCGTCGQPVQGASAHE 401
>UniRef50_A7ATI1 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 546
Score = 32.3 bits (70), Expect = 8.1
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +3
Query: 390 EVEQRVHNRQ---GHEGVHLAAARQGHPPHH 473
E Q+VH R+ G E +HL + HPPHH
Sbjct: 441 EYVQKVHEREMKSGEEAIHLPNSGTHHPPHH 471
>UniRef50_Q4P632 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 1740
Score = 32.3 bits (70), Expect = 8.1
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +2
Query: 200 NDSIQLDIATT--KIMDFIKLSRGTCV*SREAVTWGVWAPSCPARDIPAPSTLCTSRTPR 373
+DS L TT K MDF KL +G+ S G+ APS P PA S +S P
Sbjct: 270 SDSAPLAANTTPAKTMDFQKLFQGSTSNSNSGSGSGLSAPSQPTASNPAASLAPSSAAPA 329
Query: 374 DTPSP 388
+P
Sbjct: 330 APAAP 334
>UniRef50_Q64298 Cluster: Sperm mitochondrial-associated
cysteine-rich protein; n=3; Muroidea|Rep: Sperm
mitochondrial-associated cysteine-rich protein - Rattus
norvegicus (Rat)
Length = 145
Score = 32.3 bits (70), Expect = 8.1
Identities = 18/56 (32%), Positives = 21/56 (37%)
Frame = -3
Query: 517 CAAPWLRCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRCVPWSP*CAQ 350
C P + C CP P CPC A +CPC + C T C C Q
Sbjct: 47 CCTPKV-CPCPTP------CPCPATCPAACACPCPMKPCCPTKCTCCPKKCTCCPQ 95
>UniRef50_P83183 Cluster: Cysteine-rich protamine; n=1; Eledone
cirrhosa|Rep: Cysteine-rich protamine - Eledone cirrhosa
(Curled octopus) (Ozaena cirrosa)
Length = 84
Score = 32.3 bits (70), Expect = 8.1
Identities = 20/53 (37%), Positives = 20/53 (37%)
Frame = -3
Query: 463 GCPCRAAARCTPSCPCRL*TRCSTSWRRCVPWSP*CAQCRRSRDVSRGTRWCP 305
G R RC P C R RC RRC C CRR R R CP
Sbjct: 3 GSKPRCRPRCKPRCRSRSKKRCRRCRRRCSRIVKKC--CRRRSKCCRRRRRCP 53
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 597,057,932
Number of Sequences: 1657284
Number of extensions: 13470014
Number of successful extensions: 43330
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 40570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43117
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37904934977
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -