Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120227.Seq
(564 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 142 2e-35
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 142 2e-35
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 141 6e-35
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.36
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 2.5
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb... 26 3.3
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 5.8
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 5.8
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 7.7
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 142 bits (345), Expect = 2e-35
Identities = 64/84 (76%), Positives = 73/84 (86%)
Frame = +2
Query: 2 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 181
S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYP
Sbjct: 91 SVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYP 150
Query: 182 DPLIKVNDSIQLDIATTKIMDFIK 253
DPLIKVND+I+L++ T KI FIK
Sbjct: 151 DPLIKVNDTIKLNLETNKIESFIK 174
Score = 114 bits (275), Expect = 7e-27
Identities = 50/78 (64%), Positives = 66/78 (84%)
Frame = +1
Query: 274 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRG 453
M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+G
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKG 241
Query: 454 KGIRLTIAEERDKRIAAK 507
KG++L+I EERD+R A K
Sbjct: 242 KGVKLSITEERDRRRALK 259
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 142 bits (345), Expect = 2e-35
Identities = 64/84 (76%), Positives = 73/84 (86%)
Frame = +2
Query: 2 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 181
S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYP
Sbjct: 91 SVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYP 150
Query: 182 DPLIKVNDSIQLDIATTKIMDFIK 253
DPLIKVND+I+L++ T KI FIK
Sbjct: 151 DPLIKVNDTIKLNLETNKIESFIK 174
Score = 115 bits (277), Expect = 4e-27
Identities = 50/78 (64%), Positives = 66/78 (84%)
Frame = +1
Query: 274 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRG 453
M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+G
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKG 241
Query: 454 KGIRLTIAEERDKRIAAK 507
KG++L+I EERD+R A K
Sbjct: 242 KGVKLSITEERDRRRALK 259
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 141 bits (342), Expect = 6e-35
Identities = 63/84 (75%), Positives = 73/84 (86%)
Frame = +2
Query: 2 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 181
S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYP
Sbjct: 91 SVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYP 150
Query: 182 DPLIKVNDSIQLDIATTKIMDFIK 253
DPLIKVND+I+L++ T KI FIK
Sbjct: 151 DPLIKVNDTIKLNLETNKIESFIK 174
Score = 114 bits (275), Expect = 7e-27
Identities = 50/78 (64%), Positives = 66/78 (84%)
Frame = +1
Query: 274 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRG 453
M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+G
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKG 241
Query: 454 KGIRLTIAEERDKRIAAK 507
KG++L+I EERD+R A K
Sbjct: 242 KGVKLSITEERDRRRALK 259
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.5 bits (63), Expect = 0.36
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = -1
Query: 438 DVRLRALAD-----YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 313
+ RLR+L + Y V+ P EG LD+H+ A ++L GH+
Sbjct: 887 EARLRSLFESYGKLYRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 2.5
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 193 QSQRFHPVRHCNYED 237
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 445 PRGKGIRLTIAEERDKRIAAKAPRSRVKD 531
P +GI + +ER KR++A RS + D
Sbjct: 89 PNSQGISRSAVQERSKRLSASPRRSSLTD 117
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 5.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 88 SLLRGDTVDCESALNIID*TKQ 23
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 5.8
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 2 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRTIR 175
S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H ++
Sbjct: 1721 SLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEMLK 1779
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 307 GTIVSRERHPGSFDIVHIKDSTGHTFATRLNN 402
G I RE+ P + I H STG T+ N+
Sbjct: 55 GVISYREKFPMDYHIWHTAPSTGKTYLQPWND 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,346,874
Number of Sequences: 5004
Number of extensions: 49560
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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