Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120227.Seq
(564 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 124 5e-29
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 121 3e-28
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 120 6e-28
04_04_0040 + 22322839-22324173 31 0.84
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510... 30 1.5
12_02_0735 - 22636835-22639502,22639755-22640734 29 1.9
11_06_0087 - 19919224-19922304 29 1.9
04_03_1015 - 21734381-21736534 29 1.9
11_06_0560 - 24978894-24979030,24979106-24979310,24979421-249797... 29 2.6
06_01_0083 - 659510-661267,661577-662384,662700-663646 29 2.6
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 3.4
08_02_1196 - 25190040-25190065,25190224-25190302,25190554-251906... 28 4.5
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 4.5
07_03_0710 - 20873420-20874745 28 5.9
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 28 5.9
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 28 5.9
04_04_1303 - 32487174-32487871,32488583-32489123 28 5.9
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 28 5.9
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 124 bits (299), Expect = 5e-29
Identities = 56/91 (61%), Positives = 69/91 (75%)
Frame = +2
Query: 2 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 181
SI KT E FRL+YD KGRF +H I E+AK+KLCKV+ V G K +P+L T+DGRTIRYP
Sbjct: 107 SIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTNDGRTIRYP 166
Query: 182 DPLIKVNDSIQLDIATTKIMDFIKLSRGTCV 274
DPLIK ND+I++D+ T KI+DFIK G V
Sbjct: 167 DPLIKANDTIKIDLETNKIVDFIKFDVGNIV 197
Score = 113 bits (271), Expect = 1e-25
Identities = 50/83 (60%), Positives = 64/83 (77%)
Frame = +1
Query: 262 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYIS 441
GN+ M+TGGRN GRVG I SRE+H GSF+ +H++D+ GH FATR+ NVF IGK K ++S
Sbjct: 194 GNIVMVTGGRNTGRVGVIKSREKHKGSFETIHVEDALGHQFATRMGNVFTIGKERKPWVS 253
Query: 442 LPRGKGIRLTIAEERDKRIAAKA 510
LP+GKGI+L+I EE KR A A
Sbjct: 254 LPKGKGIKLSIIEEARKRNAEAA 276
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 121 bits (292), Expect = 3e-28
Identities = 54/91 (59%), Positives = 68/91 (74%)
Frame = +2
Query: 2 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 181
SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DGRTIRYP
Sbjct: 91 SIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYP 150
Query: 182 DPLIKVNDSIQLDIATTKIMDFIKLSRGTCV 274
DPLIK ND+I++D+ T KI+DFIK G V
Sbjct: 151 DPLIKANDTIKIDLETNKIVDFIKFDVGNVV 181
Score = 118 bits (283), Expect = 4e-27
Identities = 51/81 (62%), Positives = 66/81 (81%)
Frame = +1
Query: 262 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYIS 441
GN+ M+TGGRN GRVG I +RE+H GSF+ +H++D+ GH FATRL NVF IGKG K ++S
Sbjct: 178 GNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHAFATRLGNVFTIGKGNKPWVS 237
Query: 442 LPRGKGIRLTIAEERDKRIAA 504
LP+GKGI+L+I EE+ KR AA
Sbjct: 238 LPKGKGIKLSIIEEQRKRDAA 258
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 120 bits (290), Expect = 6e-28
Identities = 53/91 (58%), Positives = 68/91 (74%)
Frame = +2
Query: 2 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 181
SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DGRTIRYP
Sbjct: 91 SIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYP 150
Query: 182 DPLIKVNDSIQLDIATTKIMDFIKLSRGTCV 274
DP+IK ND+I++D+ T KI+DFIK G V
Sbjct: 151 DPIIKANDTIKIDLETNKIVDFIKFDVGNVV 181
Score = 117 bits (282), Expect = 6e-27
Identities = 51/81 (62%), Positives = 66/81 (81%)
Frame = +1
Query: 262 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYIS 441
GN+ M+TGGRN GRVG I +RE+H GSF+ +H++D+ GH FATRL NVF IGKG K ++S
Sbjct: 178 GNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVS 237
Query: 442 LPRGKGIRLTIAEERDKRIAA 504
LP+GKGI+L+I EE+ KR AA
Sbjct: 238 LPKGKGIKLSIIEEQRKRDAA 258
>04_04_0040 + 22322839-22324173
Length = 444
Score = 30.7 bits (66), Expect = 0.84
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +3
Query: 330 TSRL--LR-HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHP 464
TSRL LR H H HG + RH++ +R R H L A G P
Sbjct: 25 TSRLKGLRVHLTHVDAHGNYSRHQLLRRAARRSHHRMSRLVARATGVP 72
>07_03_1757 +
29250163-29250349,29250612-29250813,29250898-29251008,
29251112-29251160,29251247-29251353,29251439-29251942,
29252486-29252614,29252865-29253161,29253274-29253720,
29253828-29253893,29254109-29254169,29254314-29254463,
29254555-29254689,29254791-29254818,29255430-29255479
Length = 840
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 410 MNTLFNLVAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLR 288
+N +F L V L+CT+ GC + +VP P++R
Sbjct: 213 LNAIFELFVWVNDSTVLVCTIPSSRGCPPKKPLVPFGPRIR 253
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 422 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 327
PL NT+ +++A PVE L C +S + G L
Sbjct: 425 PLVTANTILSILAADYPVEKLACYLSDDGGAL 456
>11_06_0087 - 19919224-19922304
Length = 1026
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 126 DLRMFRTW*RMMAA-PSAIQTHLSKSTIPSS*TLQLRRL 239
DL R W +A PS HLS ++PSS T Q RRL
Sbjct: 208 DLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWRRL 246
>04_03_1015 - 21734381-21736534
Length = 717
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +3
Query: 90 STSCVKSSVWRPDLRMFRTW*RMMAAPSAIQTHLSKSTIPSS 215
S+S V S+V+ LR+ T R +AA I THL+ ST PS+
Sbjct: 38 SSSQVPSAVYASLLRL-ATSHRSLAAARRIATHLASSTAPST 78
>11_06_0560 -
24978894-24979030,24979106-24979310,24979421-24979748,
24980024-24980116,24980287-24980406,24982786-24982916
Length = 337
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 348 VEGAGMSLAGHDGAH-TPQVTASRDHTQVPRLN 253
+E AG G G H +P A+RDH Q+P++N
Sbjct: 1 MEHAGGEPPGGGGDHVSPPAAATRDHQQLPQVN 33
>06_01_0083 - 659510-661267,661577-662384,662700-663646
Length = 1170
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 422 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 327
PL NT+ +++A PVE L C +S + G L
Sbjct: 414 PLVTANTILSILAADYPVEKLSCYVSDDGGAL 445
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +2
Query: 308 APSCPARDI--PAPSTLCTSRTPRDTPSP 388
AP P+ D PAP T T +P TPSP
Sbjct: 70 APDAPSGDFFPPAPPTTTTPTSPGTTPSP 98
>08_02_1196 -
25190040-25190065,25190224-25190302,25190554-25190646,
25190761-25190892,25191578-25191721,25192941-25193150,
25194915-25195406
Length = 391
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 389 VAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPD 258
V KV PV+SL C + C+S + + PVI+ + D
Sbjct: 165 VLKVLPVKSLSCKQIERRSCISLEAFIRDYFLCESPVILSGYID 208
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 26 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 130
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>07_03_0710 - 20873420-20874745
Length = 441
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = -3
Query: 517 CAAPWLRC-ACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRCVPWSP*CA 353
C AP RC PAP P R+A SC + + W RC P CA
Sbjct: 120 CDAPCRRCFPQPAPLY----APARSATYANVSCRSPMCQALQSPWSRCSPPDTGCA 171
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -3
Query: 385 RRCVPWSP*CA--QCRRSRDVSRGTRWCPHAPSY 290
+RC+P S A +CR+SR S+ W P+ S+
Sbjct: 423 QRCLPESLRAAVQRCRQSRPASKVVEWAPYRHSF 456
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 27.9 bits (59), Expect = 5.9
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -2
Query: 383 KVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPDST**SP*SS 231
K+C V+S S +PG +SRD VP KL P K P+ P SS
Sbjct: 1554 KLCQVDS---PDSPQPGGISRDADVPKVVKLEVPPESSKEPEQAKKEPASS 1601
>04_04_1303 - 32487174-32487871,32488583-32489123
Length = 412
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 393 PRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPR 259
P GE ++R VL V AG++ G H P + R T+ P+
Sbjct: 170 PGGEEIARSVLRVR----AGLACRGTQAFHPPDIHRGRAATRTPK 210
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 27.9 bits (59), Expect = 5.9
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Frame = +3
Query: 258 VGELVYDHGRP*LGACG-HHRVPRETSRLLRHCAHQGLHGTHLRHE--VEQRVHNRQGHE 428
V +LVYDHGR + A G RVP + HQ T E V H++Q
Sbjct: 95 VSQLVYDHGRHGVAAAGMMRRVPAFPPQAAAAAGHQLATATDTSCESVVTSGHHHQQQQH 154
Query: 429 GVHLAAARQGHP 464
V R P
Sbjct: 155 NVVQPPPRDASP 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,090,633
Number of Sequences: 37544
Number of extensions: 415524
Number of successful extensions: 1271
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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