Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120227.Seq
         (564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             140   9e-34
SB_43945| Best HMM Match : TSP_1 (HMM E-Value=0.03)                    29   3.5  
SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)                 28   4.6  
SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)              28   6.1  
SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)                      27   8.0  
SB_8486| Best HMM Match : Granulin (HMM E-Value=0)                     27   8.0  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  140 bits (338), Expect = 9e-34
 Identities = 58/85 (68%), Positives = 74/85 (87%)
 Frame = +1

Query: 256 ESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAY 435
           ++GN+ M+ GGRN+GRVG +  RE+H GSFDIVH+KD+TGH FATRL N+F+IGKG K Y
Sbjct: 600 DTGNMAMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGNKPY 659

Query: 436 ISLPRGKGIRLTIAEERDKRIAAKA 510
           +SLP+GKG+RL+IAEERD+RIA KA
Sbjct: 660 VSLPKGKGVRLSIAEERDRRIAEKA 684



 Score =  130 bits (315), Expect = 6e-31
 Identities = 58/88 (65%), Positives = 71/88 (80%)
 Frame = +2

Query: 2   SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 181
           +I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  G K VPY+VTHD RTIRYP
Sbjct: 515 TIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRYP 574

Query: 182 DPLIKVNDSIQLDIATTKIMDFIKLSRG 265
           DP IKVND++ +DI T K++D+IK   G
Sbjct: 575 DPNIKVNDTVVIDIKTGKVIDYIKFDTG 602


>SB_43945| Best HMM Match : TSP_1 (HMM E-Value=0.03)
          Length = 407

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -3

Query: 391 SWRRCVPWSP*CAQCRRSRDVSRGTRWCPHAPSYGLP*SYTSSPTQLDEVHNLRSCN 221
           +W     WS  C   +R+R ++   +        GLP + T +P + D    + SCN
Sbjct: 39  TWNAWTAWSVSCGPAKRTRTINTTKKTVEALSCDGLPQTCTQAP-ETDSRTTMCSCN 94


>SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 397 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIA 501
           N + I G  T  +    LPR +G+  TIA+E D+R A
Sbjct: 370 NGIIITGMDTIHQNVTDLPRFQGVSFTIAKETDERTA 406


>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1252

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 397 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIA 501
           N + I G  T  +    LPR +G+  TIA+E D+R A
Sbjct: 506 NGIIITGMDTIHQNVADLPRFQGVSFTIAKETDERTA 542


>SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +3

Query: 303 CGH-HRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPH 470
           C H H +  +    + H +H  LH TH+  E  +    R G  G      R+GH  H
Sbjct: 18  CSHTHTLSNQGHTHVLHSSHNSLHNTHMEEEGCRGGMGRVGRRG------RKGHRNH 68


>SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)
          Length = 695

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -3

Query: 523 PYCAAPWLRCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRR 380
           P  A P  R +CP      G C    A +C+P C CR+ +    + RR
Sbjct: 642 PQTANPMQRQSCP------GACASSCAPKCSPGC-CRILSATGQNRRR 682


>SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)
          Length = 244

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
 Frame = +3

Query: 345 RHCAHQGLHGTHLRHEVE-QRVHNRQGHEGVHLAAARQGHPPHH 473
           +H  H+  HGTH +H V  +  H     + V        H  HH
Sbjct: 137 QHVTHKEEHGTHRQHHVTYEEEHGTHRQQHVTYEEEHGTHRQHH 180


>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
          Length = 878

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
 Frame = -3

Query: 547 VLKVYCP*PYCAAPWLRCACPAPRRW*GGCPCRAAARCTP--SCPCRL*TRCSTSWRRCV 374
           V+ V CP      P     C  P R  G CP   A  C+    C C    +C TS   C+
Sbjct: 27  VISVQCPGGEVECPDDYTCCLMPNRMYGCCPIPNAVCCSDLRHC-CPYGYKCDTSGGACI 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,998,014
Number of Sequences: 59808
Number of extensions: 454147
Number of successful extensions: 1365
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)