Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120227.Seq
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    25   0.53 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   0.92 
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    24   1.2  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   1.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   3.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.6  

>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 326 RDIPAPSTLCTSRTPRDTPSP 388
           RD+P  ST  T+   RDT +P
Sbjct: 137 RDLPGKSTTTTAEVKRDTINP 157


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
 Frame = +3

Query: 357 HQGLHGT-HLRHEVEQRVHNRQGHEGVHL---AAARQGHPPHH 473
           H  +H T H  H      H++      H    AA + GH PHH
Sbjct: 423 HSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHH 465


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 326 RDIPAPSTLCTSRTPRDTPSP 388
           RD+P  ST  T    RDT +P
Sbjct: 137 RDLPGKSTTTTVEVKRDTINP 157


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -3

Query: 199 DFDKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQF 20
           D    +WI  G  +M +    + R G+  +  T L+ ++L    + CE  +NI    K +
Sbjct: 57  DVHVMIWIGFGF-LMTF----LRRYGQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKSY 111

Query: 19  ISL 11
           +SL
Sbjct: 112 LSL 114


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 360 DVHNVEGAGMSLAGHD 313
           DVH V GAG  +  HD
Sbjct: 110 DVHGVIGAGHWIGDHD 125


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +1

Query: 337 GSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 450
           G F  VH+   T   F T    +  + +  + YI L R
Sbjct: 271 GDFQPVHVHKQTAIAFRTPTYRMQQVEQPVQVYIQLKR 308


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +1

Query: 337 GSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 450
           G F  VH+   T   F T    +  + +  + YI L R
Sbjct: 271 GDFQPVHVHKQTAIAFRTPTYRMQQVEQPVQVYIQLKR 308


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/37 (24%), Positives = 13/37 (35%)
 Frame = +3

Query: 357  HQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPP 467
            H G  G  + H      H+R G + +     R    P
Sbjct: 1755 HSGTMGPPVGHPTNASAHSRSGSQSMPRQNGRYSRVP 1791


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 88  SLLRGDTVDCESALNII 38
           SLL+ +TV C+ A++++
Sbjct: 381 SLLKENTVTCQEAMHML 397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,519
Number of Sequences: 438
Number of extensions: 4122
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)