Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120227.Seq
(564 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 126 1e-29
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 125 2e-29
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 125 2e-29
At5g16910.1 68418.m01982 cellulose synthase family protein simil... 29 1.6
At3g56260.1 68416.m06252 expressed protein 29 2.1
At3g03050.1 68416.m00301 cellulose synthase family protein (CslD... 29 2.1
At1g02730.1 68414.m00226 cellulose synthase family protein simil... 29 2.1
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical... 29 2.8
At3g21175.2 68416.m02676 zinc finger (GATA type) family protein ... 28 3.7
At3g21175.1 68416.m02675 zinc finger (GATA type) family protein ... 28 3.7
At1g14210.1 68414.m01682 ribonuclease T2 family protein contains... 28 3.7
At4g38880.1 68417.m05506 amidophosphoribosyltransferase, putativ... 28 5.0
At4g38190.1 68417.m05391 cellulose synthase family protein simil... 28 5.0
At3g54920.1 68416.m06086 pectate lyase, putative / powdery milde... 27 8.7
>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
protein S4, Arabidopsis thaliana, PIR:T48480
Length = 262
Score = 126 bits (303), Expect = 1e-29
Identities = 57/91 (62%), Positives = 69/91 (75%)
Frame = +2
Query: 2 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 181
SI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYP
Sbjct: 91 SIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYP 150
Query: 182 DPLIKVNDSIQLDIATTKIMDFIKLSRGTCV 274
DPLIK ND+I+LD+ KI++FIK G V
Sbjct: 151 DPLIKPNDTIKLDLEANKIVEFIKFDVGNVV 181
Score = 124 bits (298), Expect = 5e-29
Identities = 54/82 (65%), Positives = 69/82 (84%)
Frame = +1
Query: 262 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYIS 441
GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++S
Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVS 237
Query: 442 LPRGKGIRLTIAEERDKRIAAK 507
LP+GKGI+LTI EE KR+A++
Sbjct: 238 LPKGKGIKLTIIEEARKRLASQ 259
>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
Length = 262
Score = 125 bits (302), Expect = 2e-29
Identities = 57/91 (62%), Positives = 69/91 (75%)
Frame = +2
Query: 2 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 181
SI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYP
Sbjct: 91 SIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYP 150
Query: 182 DPLIKVNDSIQLDIATTKIMDFIKLSRGTCV 274
DPLIK ND+I+LD+ KI++FIK G V
Sbjct: 151 DPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 124 bits (298), Expect = 5e-29
Identities = 54/82 (65%), Positives = 69/82 (84%)
Frame = +1
Query: 262 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYIS 441
GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++S
Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVS 237
Query: 442 LPRGKGIRLTIAEERDKRIAAK 507
LP+GKGI+LTI EE KR+A++
Sbjct: 238 LPKGKGIKLTIIEEARKRLASQ 259
>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
ribosomal protein S4 signature from residues 8 to 22
Length = 261
Score = 125 bits (302), Expect = 2e-29
Identities = 57/91 (62%), Positives = 69/91 (75%)
Frame = +2
Query: 2 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 181
SI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYP
Sbjct: 91 SIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYP 150
Query: 182 DPLIKVNDSIQLDIATTKIMDFIKLSRGTCV 274
DPLIK ND+I+LD+ KI++FIK G V
Sbjct: 151 DPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 124 bits (298), Expect = 5e-29
Identities = 54/82 (65%), Positives = 69/82 (84%)
Frame = +1
Query: 262 GNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYIS 441
GN+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++S
Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVS 237
Query: 442 LPRGKGIRLTIAEERDKRIAAK 507
LP+GKGI+LTI EE KR++A+
Sbjct: 238 LPKGKGIKLTIIEEARKRLSAQ 259
>At5g16910.1 68418.m01982 cellulose synthase family protein similar
to gi:2827143 cellulose synthase catalytic subunit,
Arabidopsis thaliana, gi:9622886 cellulose synthase-7
from Zea mays
Length = 1145
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 422 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 327
PL NT+ +++A PVE L C +S + G L
Sbjct: 395 PLVTANTILSILAAEYPVEKLSCYVSDDGGAL 426
>At3g56260.1 68416.m06252 expressed protein
Length = 176
Score = 29.1 bits (62), Expect = 2.1
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 163 PHHPLSRPTYQSQRFHPVRHCNYEDYGLHQVESGNLCMITGGRNLGRVGTI--VSRERHP 336
P H L + ++ P+ + NYE+ L + LC GGR LG ++ V+R
Sbjct: 95 PPHSLKKRMSHDKK-SPLLYANYEEDELRSSPTSTLCCSNGGR-LGCSSSMGSVTRALFS 152
Query: 337 GSFDIVHIKDSTG 375
GS + + ++TG
Sbjct: 153 GSMEGMKRHETTG 165
>At3g03050.1 68416.m00301 cellulose synthase family protein (CslD3)
similar to cellulose synthase catalytic subunit
gi:2827143 from [Arabidopsis thaliana], cellulose
synthase-7 (gi:9622886) from Zea mays; contains Pfam
profile PF03552: Cellulose synthase
Length = 1145
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 422 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 327
PL NT+ +++A PVE L C +S + G L
Sbjct: 392 PLVTSNTILSILAADYPVEKLACYVSDDGGAL 423
>At1g02730.1 68414.m00226 cellulose synthase family protein similar
to cellulose synthase catalytic subunit [gi:13925881]
from Nicotiana alata, cellulose synthase-4 [gi:9622880]
from Zea mays
Length = 1181
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 422 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 327
PL NT+ +++A PVE L C +S + G L
Sbjct: 416 PLVTANTILSILAVDYPVEKLACYLSDDGGAL 447
>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
[Arabidopsis thaliana]; contains Pfam 00415: Regulator
of chromosome condensation (RCC1)
Length = 440
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 286 GRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFA-TRLNNVFIIGKGTKAYISL 444
G NL + + + R P +V + HT A T NNVF G+GT + +
Sbjct: 311 GNNLDQCSPV--QVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGI 362
>At3g21175.2 68416.m02676 zinc finger (GATA type) family protein
similar to zinc finger protein ZIM gi:8918533 from
[Arabidopsis thaliana]; contains Pfam PF00320: GATA zinc
finger
Length = 295
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 220 HCNYEDYGLHQVESGNLCM---ITGGRNLGRVGTIVSRERHPGS 342
H YED+GLH +++ N M GG + G I S HPG+
Sbjct: 21 HVQYEDHGLHHIDNENSMMDDHADGGMDEGVETDIPS---HPGN 61
>At3g21175.1 68416.m02675 zinc finger (GATA type) family protein
similar to zinc finger protein ZIM gi:8918533 from
[Arabidopsis thaliana]; contains Pfam PF00320: GATA zinc
finger
Length = 297
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 220 HCNYEDYGLHQVESGNLCM---ITGGRNLGRVGTIVSRERHPGS 342
H YED+GLH +++ N M GG + G I S HPG+
Sbjct: 21 HVQYEDHGLHHIDNENSMMDDHADGGMDEGVETDIPS---HPGN 61
>At1g14210.1 68414.m01682 ribonuclease T2 family protein contains
similarity to RNase GI:7768564 from [Nicotiana tabacum];
contains Pfam profile PF00445: Ribonuclease T2 family
Length = 247
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 230 TKIMDFIKLSRGTCV*SREAVTWGVWAPSCPARD 331
T + D K+S C ++ WGVWA CP+ +
Sbjct: 79 TNLFDISKISDLVCQMEKKWTEWGVWA--CPSNE 110
>At4g38880.1 68417.m05506 amidophosphoribosyltransferase, putative /
glutamine phosphoribosylpyrophosphate amidotransferase,
putative / phosphoribosyldiphosphate 5-amidotransferase,
putative similar to amidophosphoribosyltransferase
[Arabidopsis thaliana] GI:469195; contains Pfam profiles
PF00156: Phosphoribosyl transferase domain, PF00310:
Glutamine amidotransferases class-II
Length = 532
Score = 27.9 bits (59), Expect = 5.0
Identities = 28/91 (30%), Positives = 39/91 (42%)
Frame = +1
Query: 133 ECSVLGNA*WPHHPLSRPTYQSQRFHPVRHCNYEDYGLHQVESGNLCMITGGRNLGRVGT 312
EC V+G P SR +Y + H ++H E G+ L ITG + V T
Sbjct: 76 ECGVVGIHGDPE--ASRLSYLA--LHALQHRGQEGAGIVAANQNGLESITGVGLVSDVFT 131
Query: 313 IVSRERHPGSFDIVHIKDSTGHTFATRLNNV 405
PG I H++ ST + A+ L NV
Sbjct: 132 ESKLNNLPGDIAIGHVRYST--SGASMLKNV 160
>At4g38190.1 68417.m05391 cellulose synthase family protein similar
to cellulose synthase catalytic subunit gi:2827143 from
[Arabidopsis thaliana], cellulose synthase-5
(gi:9622882) from Zea mays
Length = 1111
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 422 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 327
PL NT+ +++A PVE + C +S + G L
Sbjct: 370 PLVTANTILSILAVDYPVEKVSCYLSDDGGAL 401
>At3g54920.1 68416.m06086 pectate lyase, putative / powdery mildew
susceptibility protein (PMR6) identical to powdery
mildew susceptibility protein [Arabidopsis thaliana]
GI:22506901; similar to pectate lyase 2 GP:6606534 from
[Musa acuminata]
Length = 501
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -1
Query: 381 GVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPRLNLMKSIIFVVAMS 217
G S G +DV G S + D ++ Q+ D PRL L+ S++ + +S
Sbjct: 441 GSSGGGMDVMGGTTRGSSSSSGDDSNVFQMIFGSDAPSRPRLTLLFSLLMISVLS 495
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,839,266
Number of Sequences: 28952
Number of extensions: 289417
Number of successful extensions: 830
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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