Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120226.Seq
         (859 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    22   5.4  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    22   5.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   7.1  

>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 294 ICATFTVVADHDHARDHVLLTADLVRDLGP 383
           IC T  ++A+H   ++ +L   + V D  P
Sbjct: 307 ICYTLMLLANHREVQEEILKEMEAVLDEEP 336


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 294 ICATFTVVADHDHARDHVLLTADLVRDLGP 383
           IC T  ++A+H   ++ +L   + V D  P
Sbjct: 307 ICYTLMLLANHREVQEEILKEMEAVLDEEP 336


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +1

Query: 562 NVQLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLAEQLLEAINTMQQTQ--RNE 735
           N   + AL   ++ + +++    S++ DSL D+  ++DKL    L  ++ +Q  Q  +N 
Sbjct: 342 NQDKIVALRQEQETLKSQVQRE-SDVVDSLKDVIEIVDKLLNPDL-GLSLLQVAQIFKNL 399

Query: 736 LNN 744
           L N
Sbjct: 400 LEN 402


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,571
Number of Sequences: 336
Number of extensions: 3449
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23763101
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)