Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120226.Seq
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0496 + 18079905-18081586,18084825-18084868,18086396-180865...    32   0.67 
09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,627...    30   2.1  
01_06_1593 + 38502884-38502993,38503580-38503665,38504352-385044...    30   2.7  
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901...    29   3.6  
05_03_0511 + 14907475-14907933,14907948-14908178,14908520-149088...    29   6.3  
01_06_1121 - 34657505-34658161                                         28   8.3  

>09_04_0496 +
           18079905-18081586,18084825-18084868,18086396-18086502,
           18087069-18087674,18087789-18088013,18088102-18088167,
           18088268-18088336,18088511-18088582,18088672-18088848,
           18089978-18090115
          Length = 1061

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 177 GSCHNTVKYMVDIYGASVLILRTPCS-LPTS 266
           G CHN VK +  IYG + L+L  P   LPT+
Sbjct: 546 GDCHNAVKLLSKIYGRNPLLLLAPDGPLPTA 576


>09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,
            6272359-6272511,6273381-6273586,6274280-6274733,
            6276573-6276610,6276923-6277046,6277184-6277246,
            6277350-6277412,6277526-6278152,6278267-6278294,
            6278373-6278413,6278689-6278851,6278987-6279039,
            6279217-6279262,6279373-6279444,6279578-6279741,
            6279968-6280099,6280249-6280565,6280721-6280892,
            6281009-6281107,6281275-6281349,6281446-6281504,
            6281647-6281836,6281982-6282020
          Length = 1255

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 713  IVLMASNNCSANLSNMSVKSGNESVISESNVFN 615
            +V + SN CS    NMS+KS  E + ++SN F+
Sbjct: 944  VVCLGSNTCSNKTKNMSIKS--EHIYNKSNQFD 974


>01_06_1593 +
           38502884-38502993,38503580-38503665,38504352-38504497,
           38504817-38504933,38505028-38505144,38505858-38506001,
           38506099-38506251
          Length = 290

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +1

Query: 556 NQNVQLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLAEQLLEAINTMQQTQRNE 735
           N+ + +L   E   D+I TRLN  ++ + D L  +   +D   +Q L  +  +  T R E
Sbjct: 206 NEPLHVLVEAEFPADIIDTRLNQAVTILEDLLKPIDESMDYYKKQQLRELAILNGTLREE 265


>01_06_1729 +
           39486553-39487413,39487953-39488020,39489574-39490154,
           39490623-39491432,39491738-39493035
          Length = 1205

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
 Frame = +1

Query: 412 SQARTATNIRRAGKNSSSKRHVDEQRQPNKSQQTNQFLELSNVMTGVRNQN-VQLLAALE 588
           SQ  ++ N+   G   SS     ++R  +++   N    +SN   GVR +N  QL   L 
Sbjct: 558 SQPNSSNNVGCVGTKLSSSSTERQERPSSQNAHCNGSSVISNGPKGVRTRNKYQLKMVLS 617

Query: 589 ---TAKDVILTRLNTLLSEITDSLPDLTLMLD 675
               AKD+   +   + SE + S  D+   +D
Sbjct: 618 EGFQAKDIYSAKEKKVQSEPSSSKGDVKETID 649


>05_03_0511 +
           14907475-14907933,14907948-14908178,14908520-14908855,
           14909571-14910126,14910217-14910424,14910519-14910885,
           14910988-14911110
          Length = 759

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 466 KRHVDEQR-QPNKSQQTNQFLELSNVMTGVRNQNVQLLAALETAKDVILTRLNTLLSEIT 642
           K  +DEQR Q + + +  + +EL  ++T +    V++   L T  D+        LSE+ 
Sbjct: 171 KVFLDEQRGQSSSAVRRARAVELRTILTRLGPTFVKIGQGLSTRPDLCPPEYLEELSELQ 230

Query: 643 DSLP 654
           DSLP
Sbjct: 231 DSLP 234


>01_06_1121 - 34657505-34658161
          Length = 218

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = +3

Query: 105 PLQAFQQLLFTIPSKHRKMINDAGGSCHNTVKYMVDIYGASVLILRTPCSLP 260
           P  A +  L      H   + DA       ++ M    G +VLI R+PC  P
Sbjct: 150 PAPAARSALLAAAGAHPVELGDAHRELEAELRKMAPPNGRTVLIFRSPCGCP 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,259,519
Number of Sequences: 37544
Number of extensions: 368737
Number of successful extensions: 1126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)