Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120226.Seq
         (859 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14805| Best HMM Match : DUF964 (HMM E-Value=0.22)                   36   0.042
SB_33454| Best HMM Match : PAN (HMM E-Value=0.0013)                    32   0.69 
SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)          30   2.1  
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)              29   4.8  
SB_17934| Best HMM Match : PX (HMM E-Value=2e-19)                      28   8.5  
SB_14437| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_14805| Best HMM Match : DUF964 (HMM E-Value=0.22)
          Length = 628

 Score = 35.9 bits (79), Expect = 0.042
 Identities = 38/146 (26%), Positives = 64/146 (43%)
 Frame = +1

Query: 352 SRQTSFAISVPV*IAVTFIVSQARTATNIRRAGKNSSSKRHVDEQRQPNKSQQTNQFLEL 531
           S+QT  ++ VP    VT     A+   ++    ++  +    +  RQ    QQ  Q  ++
Sbjct: 223 SKQTG-SVPVPAKALVTRAEVNAKDLDSLIEMFEHFKADTASELMRQNYLQQQREQHRQM 281

Query: 532 SNVMTGVRNQNVQLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLAEQLLEAINT 711
              +     Q+  ++AA+E   D +LT+L   L+  T S   + L  D+L    LEA+ T
Sbjct: 282 MGGLKDDVTQHQDVVAAVEAYLDPVLTKLQPALNPETISDAVVLLADDQLLRLPLEALTT 341

Query: 712 MQQTQRNELNNTNSILTFSVEHHKHQ 789
               +   L+   S L F + H  HQ
Sbjct: 342 FMIPRVTSLSRDFS-LQF-LYHRLHQ 365


>SB_33454| Best HMM Match : PAN (HMM E-Value=0.0013)
          Length = 459

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 6/114 (5%)
 Frame = +1

Query: 430 TNIRRAGKNSSSKRHVDEQRQPNKSQQTNQFLELSNVMTGVRNQNVQL------LAALET 591
           T     G    +++H   Q     +Q+TN   E++N  T + N   ++      +    T
Sbjct: 217 TKSTTGGTRGINEKHGATQETNGTTQKTNNTTEITNGTTDMTNNTTEMTNNTTEITTSTT 276

Query: 592 AKDVILTRLNTLLSEITDSLPDLTLMLDKLAEQLLEAINTMQQTQRNELNNTNS 753
                 T +    +++TD+  D+T     +    +E  N+      N    TNS
Sbjct: 277 DMTDNTTEMTNSTTDMTDNTTDVTNSTTDMTNSSIEMTNSTTDVTDNTTEMTNS 330


>SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)
          Length = 663

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 25/103 (24%), Positives = 48/103 (46%)
 Frame = +1

Query: 466 KRHVDEQRQPNKSQQTNQFLELSNVMTGVRNQNVQLLAALETAKDVILTRLNTLLSEITD 645
           K  ++ + + +K+ +  +F EL+  +         L  ALE AKD     L     +   
Sbjct: 297 KSKMESEYKIDKATKEQEFAELAKCVEEKTKTVEHLTLALEEAKD----ELQVAKRKNAS 352

Query: 646 SLPDLTLMLDKLAEQLLEAINTMQQTQRNELNNTNSILTFSVE 774
           ++ DLT  L +   Q +E + + Q+  +N  N++ S  T S++
Sbjct: 353 TIKDLTRQLQQSRRQ-VEKMESNQENLQNGNNDSKSSSTNSLD 394


>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2672

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +1

Query: 556  NQNVQLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLA--EQLLEAINTMQQTQR 729
            N   +LL       DV  TRL  +LSE +DS   +  + + ++  EQ L   NT  Q   
Sbjct: 955  NLTEKLLKETTEKLDVAETRLEKVLSENSDSQSKIQRLQETVSHVEQRLTDSNTSDQNLI 1014

Query: 730  NELNN 744
            +ELN+
Sbjct: 1015 SELNS 1019


>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
          Length = 1222

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 634 EITDSLPDLTLMLDKLAEQLLEAINTMQQTQRNELNNTNSILTFSVEHHKH 786
           EI D L +         E L E+++   ++   E+N  +S+L+ SV +HKH
Sbjct: 345 EIADKLSEAGHYEADRIEALAESVDREWKSFDMEVNQRSSLLSCSVAYHKH 395


>SB_17934| Best HMM Match : PX (HMM E-Value=2e-19)
          Length = 586

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 25/77 (32%), Positives = 36/77 (46%)
 Frame = -3

Query: 755 IELVLFNSLRCVCCIVLMASNNCSANLSNMSVKSGNESVISESNVFNLVKITSLAVSNAA 576
           I +VLF     +  IVL+  NNC+     +   +GN SVI    +  ++K     VS A 
Sbjct: 464 IVVVLFVQTLMIMTIVLLMRNNCAC----VGSVAGNNSVIGLLLMIIVIKPIQYDVSVAM 519

Query: 575 RSCTF*LRTPVITLDNS 525
                 L T +I L+NS
Sbjct: 520 M-----LHTQIICLENS 531


>SB_14437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 140 DGEQKLLKRLQRHF*ILINVIRVDPKNRRVVEHNVIRRLHI 18
           D E+K L  L  H    +  ++ DP+NR+    N+ ++LH+
Sbjct: 181 DSEEKHLDELIEHAREELTSVKTDPENRKYPFVNLHKKLHL 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,652,257
Number of Sequences: 59808
Number of extensions: 441734
Number of successful extensions: 1314
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)