Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120226.Seq
         (859 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81055-4|CAB02893.1|  824|Caenorhabditis elegans Hypothetical pr...    32   0.60 
AC024791-20|AAO12400.1|  574|Caenorhabditis elegans Hypothetical...    31   0.79 
AC024791-19|AAF60657.2|  618|Caenorhabditis elegans Hypothetical...    31   0.79 
Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF039711-8|ABS19466.1|  766|Caenorhabditis elegans Hypothetical ...    30   2.4  
Z81059-3|CAB02927.1|  246|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81059-1|CAB02925.1|  249|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z81059-5|CAJ15164.1|  176|Caenorhabditis elegans Hypothetical pr...    28   9.8  
EU051652-1|ABS85191.1|  973|Caenorhabditis elegans MEL-46 protein.     28   9.8  
CU457744-1|CAM36366.2|  973|Caenorhabditis elegans Hypothetical ...    28   9.8  

>Z81055-4|CAB02893.1|  824|Caenorhabditis elegans Hypothetical
           protein F01G10.5 protein.
          Length = 824

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
 Frame = +1

Query: 460 SSKRHVDEQRQPNKSQQTNQFLELSNVMTGVRNQNVQLLAALETAKDVILTRLNTLLSEI 639
           S K  V  +R   KS Q  +  ELSN++     ++ QLL  LE ++  +      L  + 
Sbjct: 252 SLKSDVTNKRDTAKSSQQRE-QELSNILEEKEKESAQLLQQLEESRAALRDEQRHLEHQE 310

Query: 640 TDS--LPDLTLMLDKLAEQLLEAINTMQQTQRNEL 738
            ++  + +    + +L E+L   +  +Q    NEL
Sbjct: 311 AENGKIVEQLKTVSELNEKLTMQVKDLQDASENEL 345


>AC024791-20|AAO12400.1|  574|Caenorhabditis elegans Hypothetical
           protein Y47G6A.5b protein.
          Length = 574

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
 Frame = +1

Query: 490 QPNKSQQ--TNQFLELSNVMTGVRNQNV-QLLAALETAKD-VILTRLNT------LLSEI 639
           +P+ S+Q    QFLE +  +T + +QNV  LLA  +T K  +I+T   T       L ++
Sbjct: 314 KPDHSEQLANTQFLEEAKTLTKLSHQNVIHLLAVCDTDKPYLIITEFMTNGSLLAWLQKL 373

Query: 640 TDSLPDLTLMLDK 678
           T +LP + LM ++
Sbjct: 374 TKTLPPIPLMSEE 386


>AC024791-19|AAF60657.2|  618|Caenorhabditis elegans Hypothetical
           protein Y47G6A.5a protein.
          Length = 618

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
 Frame = +1

Query: 490 QPNKSQQ--TNQFLELSNVMTGVRNQNV-QLLAALETAKD-VILTRLNT------LLSEI 639
           +P+ S+Q    QFLE +  +T + +QNV  LLA  +T K  +I+T   T       L ++
Sbjct: 358 KPDHSEQLANTQFLEEAKTLTKLSHQNVIHLLAVCDTDKPYLIITEFMTNGSLLAWLQKL 417

Query: 640 TDSLPDLTLMLDK 678
           T +LP + LM ++
Sbjct: 418 TKTLPPIPLMSEE 430


>Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical
           protein F27E5.5 protein.
          Length = 377

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -3

Query: 458 EFFPARRIFVAVLAWETMNVTAI*TGTEIAN 366
           E+  AR IFVAV+A   MN+TA+ T  ++ +
Sbjct: 184 EYSTARAIFVAVVAGAVMNITAVLTFRKVVS 214


>AF039711-8|ABS19466.1|  766|Caenorhabditis elegans Hypothetical
           protein F49D11.10 protein.
          Length = 766

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = -3

Query: 377 EIANEVCREENVISSVIVIGDDGKSSTNNCLQ*MCSATGRQRARRSQNQNGRSVNVHHVF 198
           EI + + +E+ VIS  IV    G   T+  L     +  ++    S+N  G  ++V H F
Sbjct: 154 EIPSNIRKEQIVISDRIVSYCQGLEITSIILNDSDFSIVKETKYTSKNTGGHDIDVIHQF 213

Query: 197 DRVMTRSARIV 165
           DR+      +V
Sbjct: 214 DRLSANGNYLV 224


>Z81059-3|CAB02927.1|  246|Caenorhabditis elegans Hypothetical
           protein F11F1.5 protein.
          Length = 246

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +1

Query: 511 TNQFLELSNVMTGVRNQNVQ--LLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLA 684
           T Q +EL   + G     VQ  L  A     D ++++LN L+  + D L +L   +  L 
Sbjct: 111 TQQIIELVKKIPGSALPRVQEILSNADNLGVDEVISKLNGLVPGLGDELNNLISTIFTLI 170

Query: 685 EQLLEAINTMQQTQRNELNNTNSIL 759
           +QLL  +  + Q+  + L   + I+
Sbjct: 171 KQLLNEVADILQSLPDILGKLSKIV 195


>Z81059-1|CAB02925.1|  249|Caenorhabditis elegans Hypothetical
           protein F11F1.2 protein.
          Length = 249

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
 Frame = +1

Query: 511 TNQFLELSNVMTGVRNQNVQ-LLAALET-AKDVILTRLNTLLSEITDSLPDLTLMLDKLA 684
           T + ++L   + G     VQ +L+ ++    + +L++LN L+  + D L +L   +  L 
Sbjct: 111 TQKIIDLVEKIPGSALPKVQEILSNVDNLGVEEVLSKLNGLVPGLGDELENLITTVLNLI 170

Query: 685 EQLLEAINTMQQTQRNELNNTNSIL 759
           EQLL+ +  + Q+  + L   + I+
Sbjct: 171 EQLLKEVADILQSLPDVLGELSKIV 195


>U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical
           protein C25G6.5 protein.
          Length = 455

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 25/63 (39%), Positives = 32/63 (50%)
 Frame = -3

Query: 293 NCLQ*MCSATGRQRARRSQNQNGRSVNVHHVFDRVMTRSARIVDHFSMFRWDGEQKLLKR 114
           +CL  MCSA          N N R +   H+FDRV  RS R+V    +F   GEQ+ LK+
Sbjct: 311 HCLA-MCSACLNPLIYAFFNHNFR-IEFMHLFDRVGLRSLRVV----IF---GEQESLKK 361

Query: 113 LQR 105
             R
Sbjct: 362 SMR 364


>Z81059-5|CAJ15164.1|  176|Caenorhabditis elegans Hypothetical
           protein F11F1.8 protein.
          Length = 176

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
 Frame = +1

Query: 541 MTGVRNQNVQ-LLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDK---LAEQLLEAIN 708
           + G  N  ++ L++ +    + +L  +  +L  + D L DL+ ++D     + + ++AIN
Sbjct: 81  LLGSANDELKNLISTVFKLIEQLLNEVADILQSLPDVLGDLSKIVDDKNLTSVEKIDAIN 140

Query: 709 TMQQTQRNELNNTNSILT 762
            ++ T + ELN    I+T
Sbjct: 141 QLRGTNKIELNTIIFIIT 158


>EU051652-1|ABS85191.1|  973|Caenorhabditis elegans MEL-46 protein.
          Length = 973

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 235 FCERLARCRPVAEHIYCKQLFVLLLPSS 318
           FC+++++C P+A H+    L V  + S+
Sbjct: 265 FCDQISKCEPIATHLKSSGLDVTFVSSA 292


>CU457744-1|CAM36366.2|  973|Caenorhabditis elegans Hypothetical
           protein T06A10.1 protein.
          Length = 973

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 235 FCERLARCRPVAEHIYCKQLFVLLLPSS 318
           FC+++++C P+A H+    L V  + S+
Sbjct: 265 FCDQISKCEPIATHLKSSGLDVTFVSSA 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,974,925
Number of Sequences: 27780
Number of extensions: 335745
Number of successful extensions: 1014
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)