Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120226.Seq
         (859 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   0.89 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   1.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   4.8  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        23   4.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   8.3  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +1

Query: 466 KRHVDEQRQPNKSQQTNQFLELSNVMTGVRNQNVQLLAALETAKDVILTRLNTLLSEITD 645
           + +VD +R+PN      + L +   +  + NQN ++  +L+        +L   L+EI D
Sbjct: 509 RAYVDNRRRPNPGTVFARLLSVLTELRTLGNQNSEMCFSLKFKN----KKLPVFLAEIWD 564

Query: 646 SLP 654
             P
Sbjct: 565 VTP 567


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 247 LARCRPVAEHIYCKQLFVLLLPSSPITITLEITF 348
           + + R VA H Y K+L + L+    +  T+ +TF
Sbjct: 145 MGQIREVARHFYHKELQIELVREEILFDTVHVTF 178


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 440 RIFVAVLAWETMNVTAI*TGTEIANEVCREENVISSVIVIGDDG 309
           ++FVA    ET   T+    T     +   +N++ S+  + DDG
Sbjct: 151 KMFVARHLAETPKNTSAVRYTHYIGTLATNDNILESISYVKDDG 194


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 641 VISESNVFNLVKITSL 594
           VI+ S +FNLVKI+ L
Sbjct: 296 VINFSGIFNLVKISPL 311


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 641 VISESNVFNLVKITSL 594
           VI+ S +FNLVKI+ L
Sbjct: 46  VINFSGIFNLVKISPL 61


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 235 FCERLARCRPVAEHIYCKQLFVLLLP 312
           FCE     RP++ H     + + LLP
Sbjct: 52  FCEYDPNVRPISSHQIANNVTMQLLP 77


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 724 QRNELNNTNSILTFSVEHHKHQWYAQQFA 810
           ++N++  TN  +T     H  +W A +FA
Sbjct: 47  EKNQILTTNCWVTQIWTDHHLKWNASEFA 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,667
Number of Sequences: 438
Number of extensions: 3920
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)