Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120226.Seq
         (859 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19050.1 68416.m02420 kinesin motor protein-related contains ...    32   0.56 
At1g62975.1 68414.m07111 basic helix-loop-helix (bHLH) family pr...    31   0.98 
At2g27170.1 68415.m06029 structural maintenance of chromosomes (...    31   1.3  
At5g27580.1 68418.m03303 MADS-box family protein contains Pfam p...    30   1.7  
At3g03360.1 68416.m00334 F-box family protein low similarity to ...    29   3.0  
At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containi...    29   4.0  
At4g18240.1 68417.m02709 starch synthase-related protein contain...    29   5.2  
At1g67530.1 68414.m07694 armadillo/beta-catenin repeat family pr...    28   6.9  
At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containi...    28   9.1  

>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
            profile: PF00225 Kinesin motor domain; contains
            non-consensus splice site (GC) at intron 12
          Length = 2722

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 19/65 (29%), Positives = 36/65 (55%)
 Frame = +1

Query: 526  ELSNVMTGVRNQNVQLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLAEQLLEAI 705
            E +N++T   +   Q ++ L+  +D++L R N++ S++   L ++ L    LAE LLE  
Sbjct: 1713 EATNLLTTKLSSFDQKISGLQYQEDLMLQRSNSMGSQLDILLKEIDLSNGDLAETLLEQE 1772

Query: 706  NTMQQ 720
              + Q
Sbjct: 1773 RHLNQ 1777


>At1g62975.1 68414.m07111 basic helix-loop-helix (bHLH) family
           protein (bHLH125) contains Pfam profile: PF00010
           helix-loop-helix DNA-binding domain;  supporting cDNA
           gi|20805889|gb|AF506369.1|
          Length = 259

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
 Frame = -3

Query: 410 TMNVTAI*TGTEIANEVC--REENVISSVI-VIGDDGKSSTNNCLQ*MCSATGRQRARR- 243
           T+ VT    G EI    C  R ++ +SSV+ ++  + + S  +CL    SA  +QR    
Sbjct: 181 TVVVTPCLVGVEIIISCCLGRNKSCLSSVLQMLAQEQRFSVVSCL----SARRQQRFMHT 236

Query: 242 --SQNQNGRSVNVHHVFDRVMT 183
             SQ ++G+ +N+  + D++MT
Sbjct: 237 IVSQVEDGKQINILELKDKIMT 258


>At2g27170.1 68415.m06029 structural maintenance of chromosomes
           (SMC) family protein similar to basement
           membrane-associated chondroitin proteoglycan Bamacan
           [Rattus norvegicus] GI:1785540; contains Pfam profile
           PF02463: RecF/RecN/SMC N terminal domain. No suitalble
           start codon was identified.
          Length = 1207

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
 Frame = +1

Query: 481 EQRQPNKSQQTNQFLELSNVMTGVRNQNVQLLAALETAKDVILTRLNTLLSEITDSLPDL 660
           ++++  ++QQT    + + +   V++   ++   +++  D  L +LNT+  E+ DSL +L
Sbjct: 286 KEKETVEAQQTKALKKKTKLELDVKDFQDRITGNIQSKNDA-LEQLNTVEREMQDSLREL 344

Query: 661 TLMLDKLAEQLLEAINTMQQTQR-NELNNTNSIL 759
              +  L E  ++  N  Q ++R NEL  T SIL
Sbjct: 345 E-AIKPLYESQVDKEN--QTSKRINELEKTLSIL 375


>At5g27580.1 68418.m03303 MADS-box family protein contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain); MADS-box protein
           AGL89
          Length = 223

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +1

Query: 613 RLNTLLSEITDSLPD-LTLMLDKLAEQLLEAINTMQQTQRNELNNTNSILTFSVEHHKHQ 789
           +L+  + E+ DSL   L ++ DKL   LL+  N  +  Q   +++T + L+   +HH  Q
Sbjct: 117 KLSEKVLEMKDSLESGLRVLQDKLL--LLQPENQTELGQSRAVSSTTNPLSSPEDHHHQQ 174

Query: 790 W 792
           W
Sbjct: 175 W 175


>At3g03360.1 68416.m00334 F-box family protein low similarity to
           ribosomal RNA apurinic site specific lyase [Triticum
           aestivum] GI:6505722; contains F-box domain Pfam:PF00646
          Length = 481

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +1

Query: 247 LARCRPVAEHI---YCKQLFVLLLPSSPITITLEITFSSRQTSFAISVP 384
           L+ C P+ E +   +CK+L VL L  SP  ITLEIT   R     +  P
Sbjct: 208 LSGC-PILESLLLFFCKKLKVLDLSKSPRLITLEITRRCRMEPTQLVAP 255


>At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containing
            protein contains Pfam profile PF01535: PPR repeat
          Length = 990

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 126  LLFTIPSKHRKMINDAG--GSCHNTVKYMVDIYGASVLI 236
            LL T PS   ++I +    G CHN +KY+  +Y   +++
Sbjct: 932  LLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVL 970


>At4g18240.1 68417.m02709 starch synthase-related protein contains
           similarity to starch synthase GI:4582783 from [Vigna
           unguiculata]
          Length = 1040

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
 Frame = +1

Query: 529 LSNVMTGVRNQNVQLLAALETAKDVILTRLNTLLSEITD---SLPDLTLMLDKLAEQLLE 699
           L    +G+ +    L + L  +++ + ++L+TL  E TD    +  L L+LD+  +Q  +
Sbjct: 316 LEKECSGLESSVKDLESKLSVSQEDV-SQLSTLKIECTDLWAKVETLQLLLDRATKQAEQ 374

Query: 700 AINTMQQTQ--RNELNNTNSIL 759
           A+  +QQ Q  RN+++     L
Sbjct: 375 AVIVLQQNQDLRNKVDKIEESL 396


>At1g67530.1 68414.m07694 armadillo/beta-catenin repeat family
           protein / U-box domain-containing family protein
           contains Pfam domain, PF00514:
           Armadillo/beta-catenin-like repeats and Pfam, PF04564:
           U-box domain
          Length = 782

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 22/118 (18%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
 Frame = +1

Query: 442 RAGKNSSSKRHVDEQRQPNKSQQTNQFLELSNVMTG------VRNQNVQLLAALETAKDV 603
           ++G  +    H+  ++  N  Q  ++  +L   +TG           + L+  L+  +D+
Sbjct: 48  KSGIQALCSLHIALEKAKNILQHCSECSKLYLAITGDAVLLKFEKAKIALIDGLKRVEDI 107

Query: 604 ILTRLNTLLSEITDSLPDLTLMLDKLAEQLLEAINTMQQTQRNELNNTNSILTFSVEH 777
           + + + + + EI   L +   MLD   +++ + I  + Q Q  + +N N      + H
Sbjct: 108 VPSSIGSQILEIVGELENTRFMLDPSEKEVGDQIIALLQ-QGKKFDNCNDNTELEIFH 164


>At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containing
           protein nearly identical over 405 amino acids to DYW7
           protein of unknown function GB:CAA06829 from
           [Arabidopsis thaliana] (Plant Mol. Biol. 42 (4), 603-613
           (2000)); contains Pfam profile PF01535: PPR repeat
          Length = 894

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 183 CHNTVKYMVDIYGASVLILRTPC 251
           CH+T KY+   YG  +L+  T C
Sbjct: 857 CHDTAKYVSKRYGCDILLEDTRC 879


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,612,053
Number of Sequences: 28952
Number of extensions: 298784
Number of successful extensions: 926
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)