Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120224.Seq
         (743 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       26   0.37 
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    26   0.37 
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    26   0.37 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   4.5  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   4.5  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   6.0  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    22   6.0  
AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.      22   6.0  

>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +2

Query: 23  VTFWFEIRTSEFERHVSWKNRDGCQSRRERLFTGGHR--QRNKTAAPPRTQHDSRHRH 190
           +  WF+ R  + ++ +        Q+RRER     H+  Q+ K     +  H S H+H
Sbjct: 50  IKIWFQNRRMKLKKELRAVKEINEQARREREEQERHKQQQQEKQQKIEQQTHSSIHQH 107


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +2

Query: 23  VTFWFEIRTSEFERHVSWKNRDGCQSRRERLFTGGHR--QRNKTAAPPRTQHDSRHRH 190
           +  WF+ R  + ++ +        Q+RRER     H+  Q+ K     +  H S H+H
Sbjct: 201 IKIWFQNRRMKLKKELRAVKEINEQARREREEQERHKQQQQEKQQKIEQQTHSSIHQH 258


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +2

Query: 23  VTFWFEIRTSEFERHVSWKNRDGCQSRRERLFTGGHR--QRNKTAAPPRTQHDSRHRH 190
           +  WF+ R  + ++ +        Q+RRER     H+  Q+ K     +  H S H+H
Sbjct: 260 IKIWFQNRRMKLKKELRAVKEINEQARREREEQERHKQQQQEKQQKIEQQTHSSIHQH 317


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 133 PMPSREESFPTALTTVSVFP 74
           P P R ESF   + TVS  P
Sbjct: 734 PPPPRVESFAETVRTVSKIP 753


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -3

Query: 141 FLCRCPP 121
           F+CRCPP
Sbjct: 166 FMCRCPP 172


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/29 (24%), Positives = 16/29 (55%)
 Frame = +2

Query: 110 RLFTGGHRQRNKTAAPPRTQHDSRHRHPV 196
           +++   HR + K A   +  HD ++ +P+
Sbjct: 85  KIWFQNHRYKTKRAQHEKGMHDQQNNNPL 113


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 680 YSLVSLKLANGWTDLANFG 736
           Y LV+L     WTD+  FG
Sbjct: 122 YLLVALYSGYVWTDILGFG 140



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -3

Query: 651 RFLQFYAKCILLATRPXRFGNCNLL*ISQLFNGCYY 544
           +F   Y  C+++     ++ N NLL   QL N  ++
Sbjct: 155 QFYYTYFLCVIVCIFRGKYRNINLLLTEQLQNRRFF 190


>AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -2

Query: 130 MPSREESF--PTALTTVSVFPRHVSLKLRRSYFE 35
           MP+  E F  PT     S+  ++V+ K+R  Y+E
Sbjct: 326 MPNDFEEFVHPTVAKRGSITSKNVANKIRDFYYE 359


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,733
Number of Sequences: 336
Number of extensions: 3234
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)