Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120224.Seq
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0084 - 25690346-25691206                                         33   0.18 
01_06_0143 - 26916490-26917719                                         31   1.3  
02_01_0026 - 165640-166185                                             29   2.9  
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623...    29   5.2  
04_01_0451 + 5845249-5846133,5846220-5846509,5855590-5856060,585...    29   5.2  
07_01_1151 - 10822616-10823863                                         28   6.8  
08_01_0876 - 8598664-8599374                                           28   9.0  

>02_05_0084 - 25690346-25691206
          Length = 286

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = -2

Query: 226 FPMNRAAISSDGMTMSTIML-GSWWGGSFVS-LPMPSREESFPTALTTVS-VFPRHVSLK 56
           +P   AA+   GM  ST    G   GG  ++ LP  SR +S  TA  +     P H+S +
Sbjct: 197 YPPPPAAVGGVGMFHSTTTTTGGMLGGMALAVLPWVSRGQSPATAAASAYYTSPYHMSPR 256

Query: 55  LRRSYFEPER 26
           LRR + E ER
Sbjct: 257 LRRQHMEVER 266


>01_06_0143 - 26916490-26917719
          Length = 409

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 641 SSMLNVYY*QPARFASETVIYYRFLNYLMDVIIHKNLPLQSLYL*RN 501
           SS  N+ + QPA  ++    Y R ++ + D+I H+   LQ  ++  N
Sbjct: 173 SSASNIAFCQPASLSTSWTAYRRDMDIIQDLIFHRGALLQGFHVLTN 219


>02_01_0026 - 165640-166185
          Length = 181

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/88 (23%), Positives = 36/88 (40%)
 Frame = +3

Query: 36  SKYERLSLSDTCLGKTETVVKAVGNDSSREGIGKETKLPPHQEPNMIVDIVIPSLLIAAL 215
           S Y    L    L  T  +  A+   +S   + ++ + PP   P   +D  +     AA 
Sbjct: 56  SGYPGADLHGLALFSTMPLRSALATIASEARVLRD-RAPPGSPPRSCLDSCLEVFRDAAY 114

Query: 216 FIGNAFIVLIIYKTGNGKTTIWKTNSTP 299
            +GNA   +  ++ G+ KT +  T   P
Sbjct: 115 NLGNAVAAIESWRYGDAKTAMSATTDAP 142


>04_04_1593 -
           34661670-34661798,34661882-34661989,34662129-34662368,
           34662614-34662782,34662872-34663362,34663681-34663991,
           34664396-34664473,34665034-34665228,34665363-34665524,
           34665759-34665840
          Length = 654

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = -2

Query: 187 TMSTIMLGSWWGGSFV-----SLPMPSREESFPTALTTVSVFPRH 68
           T S   L SW+ G+ +     +LP PSR+ S P  L    VF  H
Sbjct: 431 TASDTRLSSWYDGNCLLKAIDTLPPPSRDVSKPLRLPICDVFSSH 475


>04_01_0451 +
           5845249-5846133,5846220-5846509,5855590-5856060,
           5856898-5857063,5857100-5857498,5858031-5858075
          Length = 751

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
 Frame = +2

Query: 155 PPRTQHDSRHRHPVAADSGPVHR-----KRVHRTHHL*NRKRK---NDDLEDEFN 295
           PP TQH S  +H V    GP  R     +  + T  + +RKRK   NDD  D+ N
Sbjct: 304 PPITQHRSPRQHTVQGGGGPSIRSDPQPQTSNPTGQIGSRKRKLMLNDDEGDDGN 358


>07_01_1151 - 10822616-10823863
          Length = 415

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
 Frame = +2

Query: 155 PPRTQHDSRHRHPVAADSGP-----VHRKRVHRTHHL*NRKRKNDDLEDEFNTIPLNGN 316
           PP  Q  S HRH   A  GP     V       T+   +RKRK    +DE +     GN
Sbjct: 308 PPIAQRHSLHRHTGQASGGPKIQSDVQPNASRSTNQSDSRKRKLVSSDDEGDDAEKTGN 366


>08_01_0876 - 8598664-8599374
          Length = 236

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 262 TEKRRFGRRIQHHSIKRERAQR 327
           T +RR   R++H S+KRER +R
Sbjct: 191 TRRRRCRLRLRHRSMKRERVER 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,303,105
Number of Sequences: 37544
Number of extensions: 359974
Number of successful extensions: 991
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)