Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120224.Seq
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)          32   0.56 
SB_47500| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-28)                 31   0.99 
SB_58832| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.99 
SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)        31   1.3  
SB_42559| Best HMM Match : 7tm_1 (HMM E-Value=0)                       30   1.7  
SB_28876| Best HMM Match : 7tm_1 (HMM E-Value=0)                       30   1.7  
SB_36157| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-18)                 30   2.3  
SB_20216| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   3.0  
SB_22354| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   3.0  
SB_7869| Best HMM Match : DUF947 (HMM E-Value=6.3)                     29   4.0  
SB_19167| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_24090| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_57887| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)
          Length = 734

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +2

Query: 98  SRRERLFTGGHRQRNKTAAPPRTQHDSRHRH 190
           S RE L+T      N+T   PRTQ D RHRH
Sbjct: 145 SERESLYTP---HVNRTGNKPRTQRDERHRH 172


>SB_47500| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-28)
          Length = 961

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 144 KLPPHQEPNMIVDIVIPSLLIAALFIGNAFIVLIIYKTGNGKTT 275
           K+ P Q    IV I + ++++    IGN  + LI+ KT     T
Sbjct: 9   KIDPEQPWKRIVKITVYAIIMVVALIGNILVCLIVRKTSKATRT 52


>SB_58832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 138 ETKLPPHQEPNMIVDIVIPSLLIAAL-FIGNAFIVLIIYKTGNGKT 272
           +TK   HQ     V + + S++   + F GN+ ++L IYKT + +T
Sbjct: 3   QTKCSDHQHSGSFVTLAVFSIISGLIAFCGNSVVLLAIYKTQSLRT 48


>SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)
          Length = 1183

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +2

Query: 95  QSRRERLFTGGHRQRNKTAA---PPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*NRKR 265
           + R E++    HRQ+N   A       +++ RH + ++  +    R R  + H L + + 
Sbjct: 289 KQREEKVIQNLHRQQNDAQANLSQSDVRNNERHTNRISHVNIETVRNRNEQDHELASLRN 348

Query: 266 KNDDLEDEFNTI 301
           + DDL+ E  T+
Sbjct: 349 ERDDLKREVRTL 360


>SB_42559| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 388

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 198 LLIAALFIGNAFIVLIIYKTGNGKTTI 278
           L++    +GN F+VLI+YK  + +TT+
Sbjct: 35  LIMVLALVGNLFVVLIVYKNKSMQTTV 61


>SB_28876| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 356

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +3

Query: 114 SSREGIGKETKLPPHQEPNMIVDIVIPSLLIAALFIGNAFIVLIIYKTGNGKTTI 278
           S+    G +  LP H +    V +   SL++    +GN  +++++ +T   + TI
Sbjct: 5   SNATDFGAKCSLPQHSDVIQAVKVTSYSLILVFSALGNILVIVVVLRTRQMRRTI 59


>SB_36157| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-18)
          Length = 474

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/72 (22%), Positives = 34/72 (47%)
 Frame = +3

Query: 63  DTCLGKTETVVKAVGNDSSREGIGKETKLPPHQEPNMIVDIVIPSLLIAALFIGNAFIVL 242
           D CL K +T+  ++ ND+S       TK    ++      +    L+  A+  GN F++ 
Sbjct: 2   DGCLNKNDTICNSL-NDTSDLDYDGLTKCE-WEDTARYTQVAALGLITFAILAGNTFVIY 59

Query: 243 IIYKTGNGKTTI 278
           ++++    + T+
Sbjct: 60  LVFRNKTMRKTV 71


>SB_20216| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 372

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +3

Query: 99  AVGNDSSREGIGKETKLPPHQEPNMIVDIVIPSLLIAALFIGNAFIVLIIYKTGNGKTTI 278
           A+ N+SS  G      L    +      I   SL++    IGN  ++L++YK  N + TI
Sbjct: 7   AMRNESSDSGTRCHWDLLEATDAARNGKIAAFSLVLIVSLIGNILVILVVYKNKNMRKTI 66


>SB_22354| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 372

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +3

Query: 99  AVGNDSSREGIGKETKLPPHQEPNMIVDIVIPSLLIAALFIGNAFIVLIIYKTGNGKTTI 278
           A+ N+SS  G      L    +      I   SL++    IGN  ++L++YK  N + TI
Sbjct: 7   AMRNESSDSGTRCHWDLLEATDAARNGKIAAFSLVLIVSLIGNILVILVVYKNKNMRKTI 66


>SB_7869| Best HMM Match : DUF947 (HMM E-Value=6.3)
          Length = 408

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 38  EIRTSEFERHVSWKNRDGCQSRRERLFTGGHRQ 136
           EI +   ER  +WK R+G  SR+ R  +GGHR+
Sbjct: 329 EITSLCAERAPAWKKRNG--SRKRRRDSGGHRE 359


>SB_19167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +2

Query: 74  WKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRT 241
           WKN D  + +        H + N+    P   HDS+   P+AA S   H K  H+T
Sbjct: 169 WKNHDSPEHQPPPAEENTHHEYNQR---PWKSHDSQELQPLAAGSKHQHSK--HKT 219


>SB_24090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 114 SSREGIGKETKLPPHQEPNMIVDIVIP 194
           S REG   ++ +PP  E N + D VIP
Sbjct: 264 SEREGEPVDSTIPPSPEANSVADYVIP 290


>SB_57887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 145 FVSLPMPSREESFPTALTTV-SVFPRHVSLKLR 50
           ++ +P  S  +S P  +  + S+F RH SLKLR
Sbjct: 166 YIEVPQLSDSQSSPVTINPLKSIFARHGSLKLR 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,153,251
Number of Sequences: 59808
Number of extensions: 412534
Number of successful extensions: 1011
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)