Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120224.Seq
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48245-2|CAA88291.1|  309|Caenorhabditis elegans Hypothetical pr...    33   0.16 
Z37139-10|CAA85495.1|  309|Caenorhabditis elegans Hypothetical p...    33   0.16 
U95074-2|AAB94648.1|  309|Caenorhabditis elegans cyclophilin iso...    33   0.16 
U36581-1|AAC47131.1|  309|Caenorhabditis elegans cyclophilin iso...    33   0.16 
Z37139-3|CAA85492.2|  793|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z32681-1|CAA83608.1|  761|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>Z48245-2|CAA88291.1|  309|Caenorhabditis elegans Hypothetical
           protein T27D1.1 protein.
          Length = 309

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = +2

Query: 59  ERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP 193
           E  ++ + R G + RRER  T  H +RN   AP +  HDS H+HP
Sbjct: 264 ENGITVRGRGGVRFRRERSATPEHWRRN---APTKWVHDS-HKHP 304


>Z37139-10|CAA85495.1|  309|Caenorhabditis elegans Hypothetical
           protein T27D1.1 protein.
          Length = 309

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = +2

Query: 59  ERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP 193
           E  ++ + R G + RRER  T  H +RN   AP +  HDS H+HP
Sbjct: 264 ENGITVRGRGGVRFRRERSATPEHWRRN---APTKWVHDS-HKHP 304


>U95074-2|AAB94648.1|  309|Caenorhabditis elegans cyclophilin
           isoform 9 protein.
          Length = 309

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = +2

Query: 59  ERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP 193
           E  ++ + R G + RRER  T  H +RN   AP +  HDS H+HP
Sbjct: 264 ENGITVRGRGGVRFRRERSATPEHWRRN---APTKWVHDS-HKHP 304


>U36581-1|AAC47131.1|  309|Caenorhabditis elegans cyclophilin
           isoform 9 protein.
          Length = 309

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = +2

Query: 59  ERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP 193
           E  ++ + R G + RRER  T  H +RN   AP +  HDS H+HP
Sbjct: 264 ENGITVRGRGGVRFRRERSATPEHWRRN---APTKWVHDS-HKHP 304


>Z37139-3|CAA85492.2|  793|Caenorhabditis elegans Hypothetical
           protein C14B1.6 protein.
          Length = 793

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 266 KNDDLEDEFNTIPLNGNVHSAGYAV*SPAHQISLR-ESQIN 385
           K+D+LEDE NTI L   +HS       P  ++S R +SQ+N
Sbjct: 227 KHDELEDELNTIALE-ELHSTTRDTSPPRTRLSTRAQSQLN 266


>U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical
           protein R04E5.8b protein.
          Length = 142

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 122 GGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*NRKRKND 274
           G H  R     PPR  +  R+RH      G  H+ +    HH  +R R+ +
Sbjct: 67  GQHHNRGHHHGPPRNHNQDRNRH--RNHDGNRHQNQDRSRHHNQDRNRRQN 115


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical protein
            R04E5.8a protein.
          Length = 997

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 122  GGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*NRKRKND 274
            G H  R     PPR  +  R+RH      G  H+ +    HH  +R R+ +
Sbjct: 911  GQHHNRGHHHGPPRNHNQDRNRH--RNHDGNRHQNQDRSRHHNQDRNRRQN 959


>Z32681-1|CAA83608.1|  761|Caenorhabditis elegans Hypothetical
           protein F56F3.1 protein.
          Length = 761

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +2

Query: 128 HRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVH 235
           H Q+         QH   HR P   + GP H++ +H
Sbjct: 411 HLQKFAKQQAESGQHIHHHRQPTPPNGGPQHQQHLH 446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,896,277
Number of Sequences: 27780
Number of extensions: 316247
Number of successful extensions: 811
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)