Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120224.Seq
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   0.99 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.3  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -2

Query: 211 AAISSDGMTMSTIMLGSWWGGSFVSLPMPSREESFPTALTTVSVFPRHVSLKLR 50
           A    D +T + + LG       V + +P  ++  P  LTTV    +  S KLR
Sbjct: 176 AIFDGDFITENNLPLGLEVWRDKVFITLPKWKDGIPVTLTTVPKHSKTKSPKLR 229


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 69  CLGKTETVVKAVGNDSSREGIGKETKLPPHQEPNMIVDIVIP 194
           C GK + +V   G   +  GIG++ K      PN+ +  V P
Sbjct: 203 CEGKIDYLVAGAGTGGTISGIGRKLK---ELSPNIKIIAVDP 241


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 118 EESFPTALTTVSVFPRHVSLKLRR 47
           E+S       +SV P HV++K+R+
Sbjct: 228 EQSTEQERLLLSVLPEHVAVKMRQ 251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,998
Number of Sequences: 438
Number of extensions: 4550
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)